Publications 2022

Chewapreecha C, Pensar J, Chattagul S, Pesonen M, Sangphukieo A, Boonklang P, Potisap C, Koosakulnirand S, Feil EJ, Dunachie S, Chantratita N, Limmathurotsakul D, Peacock SJ, Day NPJ, Parkhill J, Thomson NR, Sermswan RW, Corander J (2022)
Co-evolutionary Signals Identify Burkholderia pseudomallei Survival Strategies in a Hostile Environment
Mol Biol Evol, 39 (1)
DOI 10.1093/molbev/msab306, PubMed 34662416

Hagemo JS, Skulberg AK, Rehn M, Valberg M, Pesonen M, Heimdal HJ, Heyerdahl F (2022)
Inhaled nitric oxide as temporary respiratory stabilization in patients with COVID-19 related respiratory failure (INOCOV): Study protocol for a randomized controlled trial
PLoS One, 17 (5), e0268822
DOI 10.1371/journal.pone.0268822, PubMed 35622848

Mäklin T, Thorpe HA, Pöntinen AK, Gladstone RA, Shao Y, Pesonen M, McNally A, Johnsen PJ, Samuelsen Ø, Lawley TD, Honkela A, Corander J (2022)
Strong pathogen competition in neonatal gut colonisation
Nat Commun, 13 (1), 7417
DOI 10.1038/s41467-022-35178-5, PubMed 36456554

Publications 2021

Hoffmann-Vold AM, Fretheim HH, Sarna VK, Barua I, Carstens MN, Distler O, Khanna D, Volkmann ER, Midtvedt Ø, Didriksen H, Dhainaut A, Halse AK, Bakland G, Pesonen M, Olsen I, Molberg Ø (2021)
Safety and efficacy of faecal microbiota transplantation by Anaerobic Cultivated Human Intestinal Microbiome (ACHIM) in patients with systemic sclerosis: study protocol for the randomised controlled phase II ReSScue trial
BMJ Open, 11 (6), e048541
DOI 10.1136/bmjopen-2020-048541, PubMed 34168032

MacAlasdair N, Pesonen M, Brynildsrud O, Eldholm V, Kristiansen PA, Corander J, Caugant DA, Bentley SD (2021)
The effect of recombination on the evolution of a population of Neisseria meningitidis
Genome Res, 31 (7)
DOI 10.1101/gr.264465.120, PubMed 34108268

Pöntinen AK, Top J, Arredondo-Alonso S, Tonkin-Hill G, Freitas AR, Novais C, Gladstone RA, Pesonen M, Meneses R, Pesonen H, Lees JA, Jamrozy D, Bentley SD, Lanza VF, Torres C, Peixe L, Coque TM, Parkhill J, Schürch AC, Willems RJL, Corander J (2021)
Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era
Nat Commun, 12 (1), 1523
DOI 10.1038/s41467-021-21749-5, PubMed 33750782

Publications 2020

Top J, Arredondo-Alonso S, Schürch AC, Puranen S, Pesonen M, Pensar J, Willems RJL, Corander J (2020)
Genomic rearrangements uncovered by genome-wide co-evolution analysis of a major nosocomial pathogen, Enterococcus faecium
Microb Genom, 6 (12)
DOI 10.1099/mgen.0.000488, PubMed 33253085

Aalto-Araneda M, Pöntinen A, Pesonen M, Corander J, Markkula A, Tasara T, Stephan R, Korkeala H (2020)
Strain Variability of Listeria monocytogenes under NaCl Stress Elucidated by a High-Throughput Microbial Growth Data Assembly and Analysis Protocol
Appl Environ Microbiol, 86 (6)
DOI 10.1128/AEM.02378-19, PubMed 31900307