Publications 2024

Calland JK, Pesonen ME, Mehat J, Pascoe B, Haydon DJ, Lourenco J, Lukasiewicz B, Mourkas E, Hitchings MD, La Ragione RM, Hammond P, Wallis TS, Corander J, Sheppard SK (2024)
Genomic tailoring of autogenous poultry vaccines to reduce Campylobacter from farm to fork
NPJ Vaccines, 9 (1), 105
DOI 10.1038/s41541-024-00879-z, PubMed 38866805

Mallawaarachchi S, Tonkin-Hill G, Pöntinen AK, Calland JK, Gladstone RA, Arredondo-Alonso S, MacAlasdair N, Thorpe HA, Top J, Sheppard SK, Balding D, Croucher NJ, Corander J (2024)
Detecting co-selection through excess linkage disequilibrium in bacterial genomes
NAR Genom Bioinform, 6 (2), lqae061
DOI 10.1093/nargab/lqae061, PubMed 38846349

Pascoe B, Futcher G, Pensar J, Bayliss SC, Mourkas E, Calland JK, Hitchings MD, Joseph LA, Lane CG, Greenlee T, Arning N, Wilson DJ, Jolley KA, Corander J, Maiden MCJ, Parker CT, Cooper KK, Rose EB, Hiett K, Bruce BB, Sheppard SK (2024)
Machine learning to attribute the source of Campylobacter infections in the United States: A retrospective analysis of national surveillance data
J Infect, 89 (5), 106265
DOI 10.1016/j.jinf.2024.106265, PubMed 39245152

Taylor AJ, Yahara K, Pascoe B, Ko S, Mageiros L, Mourkas E, Calland JK, Puranen S, Hitchings MD, Jolley KA, Kobras CM, Bayliss S, Williams NJ, van Vliet AHM, Parkhill J, Maiden MCJ, Corander J, Hurst LD, Falush D, Keim P, Didelot X, Kelly DJ, Sheppard SK (2024)
Epistasis, core-genome disharmony, and adaptation in recombining bacteria
mBio, 15 (6), e0058124
DOI 10.1128/mbio.00581-24, PubMed 38683013

Publications 2023

Calland JK, Haukka K, Kpordze SW, Brusah A, Corbella M, Merla C, Samuelsen Ø, Feil EJ, Sassera D, Karikari AB, Saba CKS, Thorpe HA, Corander J (2023)
Population structure and antimicrobial resistance among Klebsiella isolates sampled from human, animal, and environmental sources in Ghana: a cross-sectional genomic One Health study
Lancet Microbe, 4 (11), e943-e952
DOI 10.1016/S2666-5247(23)00208-2, PubMed 37858320

Publications 2022

Kittiwan N, Calland JK, Mourkas E, Hitchings MD, Murray S, Tadee P, Tadee P, Duangsonk K, Meric G, Sheppard SK, Patchanee P, Pascoe B (2022)
Genetic diversity and variation in antimicrobial-resistance determinants of non-serotype 2 Streptococcus suis isolates from healthy pigs
Microb Genom, 8 (11)
DOI 10.1099/mgen.0.000882, PubMed 36326658

Mouftah SF, Pascoe B, Calland JK, Mourkas E, Tonkin N, Lefevre C, Deuker D, Smith S, Wickenden H, Hitchings MD, Sheppard SK, Elhadidy M (2022)
Local accessory gene sharing among Egyptian Campylobacter potentially promotes the spread of antimicrobial resistance
Microb Genom, 8 (6)
DOI 10.1099/mgen.0.000834, PubMed 35675117

Mourkas E, Yahara K, Bayliss SC, Calland JK, Johansson H, Mageiros L, Muñoz-Ramirez ZY, Futcher G, Méric G, Hitchings MD, Sandoval-Motta S, Torres J, Jolley KA, Maiden MCJ, Ellström P, Waldenström J, Pascoe B, Sheppard SK (2022)
Host ecology regulates interspecies recombination in bacteria of the genus Campylobacter
Elife, 11
DOI 10.7554/eLife.73552, PubMed 35191377

Publications 2021

Calland JK, Pascoe B, Bayliss SC, Mourkas E, Berthenet E, Thorpe HA, Hitchings MD, Feil EJ, Corander J, Blaser MJ, Falush D, Sheppard SK (2021)
Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages
PLoS Genet, 17 (9), e1009829
DOI 10.1371/journal.pgen.1009829, PubMed 34582435

Mageiros L, Méric G, Bayliss SC, Pensar J, Pascoe B, Mourkas E, Calland JK, Yahara K, Murray S, Wilkinson TS, Williams LK, Hitchings MD, Porter J, Kemmett K, Feil EJ, Jolley KA, Williams NJ, Corander J, Sheppard SK (2021)
Genome evolution and the emergence of pathogenicity in avian Escherichia coli
Nat Commun, 12 (1), 765
DOI 10.1038/s41467-021-20988-w, PubMed 33536414

Mageiros L, Méric G, Bayliss SC, Pensar J, Pascoe B, Mourkas E, Calland JK, Yahara K, Murray S, Wilkinson TS, Williams LK, Hitchings MD, Porter J, Kemmett K, Feil EJ, Jolley KA, Williams NJ, Corander J, Sheppard SK (2021)
Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli
Nat Commun, 12 (1), 1934
DOI 10.1038/s41467-021-22238-5, PubMed 33753730

Peters S, Pascoe B, Wu Z, Bayliss SC, Zeng X, Edwinson A, Veerabadhran-Gurunathan S, Jawahir S, Calland JK, Mourkas E, Patel R, Wiens T, Decuir M, Boxrud D, Smith K, Parker CT, Farrugia G, Zhang Q, Sheppard SK, Grover M (2021)
Campylobacter jejuni genotypes are associated with post-infection irritable bowel syndrome in humans
Commun Biol, 4 (1), 1015
DOI 10.1038/s42003-021-02554-8, PubMed 34462533

Publications 2020

Mouftah SF, Cobo-Díaz JF, Álvarez-Ordóñez A, Mousa A, Calland JK, Pascoe B, Sheppard SK, Elhadidy M (2020)
Stress resistance associated with multi-host transmission and enhanced biofilm formation at 42 °C among hyper-aerotolerant generalist Campylobacter jejuni
Food Microbiol, 95, 103706
DOI 10.1016/j.fm.2020.103706, PubMed 33397624

Mourkas E, Taylor AJ, Méric G, Bayliss SC, Pascoe B, Mageiros L, Calland JK, Hitchings MD, Ridley A, Vidal A, Forbes KJ, Strachan NJC, Parker CT, Parkhill J, Jolley KA, Cody AJ, Maiden MCJ, Kelly DJ, Sheppard SK (2020)
Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni
Proc Natl Acad Sci U S A, 117 (20), 11018-11028
DOI 10.1073/pnas.1917168117, PubMed 32366649

Pascoe B, Schiaffino F, Murray S, Méric G, Bayliss SC, Hitchings MD, Mourkas E, Calland JK, Burga R, Yori PP, Jolley KA, Cooper KK, Parker CT, Olortegui MP, Kosek MN, Sheppard SK (2020)
Genomic epidemiology of Campylobacter jejuni associated with asymptomatic pediatric infection in the Peruvian Amazon
PLoS Negl Trop Dis, 14 (8), e0008533
DOI 10.1371/journal.pntd.0008533, PubMed 32776937

Publications 2019

Banaszkiewicz S, Calland JK, Mourkas E, Sheppard SK, Pascoe B, Bania J (2019)
Genetic Diversity of Composite Enterotoxigenic Staphylococcus epidermidis Pathogenicity Islands
Genome Biol Evol, 11 (12), 3498-3509
DOI 10.1093/gbe/evz259, PubMed 31769803

Mourkas E, Florez-Cuadrado D, Pascoe B, Calland JK, Bayliss SC, Mageiros L, Méric G, Hitchings MD, Quesada A, Porrero C, Ugarte-Ruiz M, Gutiérrez-Fernández J, Domínguez L, Sheppard SK (2019)
Gene pool transmission of multidrug resistance among Campylobacter from livestock, sewage and human disease
Environ Microbiol, 21 (12), 4597-4613
DOI 10.1111/1462-2920.14760, PubMed 31385413

Pascoe B, Williams LK, Calland JK, Meric G, Hitchings MD, Dyer M, Ryder J, Shaw S, Lopes BS, Chintoan-Uta C, Allan E, Vidal A, Fearnley C, Everest P, Pachebat JA, Cogan TA, Stevens MP, Humphrey TJ, Wilkinson TS, Cody AJ, Colles FM, Jolley KA, Maiden MCJ, Strachan N, Pearson BM et al. (2019)
Domestication of Campylobacter jejuni NCTC 11168
Microb Genom, 5 (7)
DOI 10.1099/mgen.0.000279, PubMed 31310201