Xiaokang Zhang

  • Postdoc; PhD
 

Publications 2020

Cao B, Li X, Zhang X, Wang B, Zhang Q, Wei X (2020)
Designing Uncorrelated Address Constrain for DNA Storage by DMVO Algorithm
IEEE/ACM Trans Comput Biol Bioinform, PP (in press)
DOI 10.1109/TCBB.2020.3011582, PubMed 32750895

Dale K, Yadetie F, Müller MB, Pampanin DM, Gilabert A, Zhang X, Tairova Z, Haarr A, Lille-Langøy R, Lyche JL, Porte C, Karlsen OA, Goksøyr A (2020)
Proteomics and lipidomics analyses reveal modulation of lipid metabolism by perfluoroalkyl substances in liver of Atlantic cod (Gadus morhua)
Aquat Toxicol, 227, 105590
DOI 10.1016/j.aquatox.2020.105590, PubMed 32891021

Gao T, Xing S, Xu M, Fu P, Yao J, Zhang X, Zhao Y, Zhao C (2020)
A peptide nucleic acid-regulated fluorescence resonance energy transfer DNA assay based on the use of carbon dots and gold nanoparticles
Mikrochim Acta, 187 (7), 375
DOI 10.1007/s00604-020-04357-w, PubMed 32518969

Hanna EM, Zhang X, Eide M, Fallahi S, Furmanek T, Yadetie F, Zielinski DC, Goksøyr A, Jonassen I (2020)
ReCodLiver0.9: Overcoming Challenges in Genome-Scale Metabolic Reconstruction of a Non-model Species
Front Mol Biosci, 7, 591406
DOI 10.3389/fmolb.2020.591406, PubMed 33324679

He D, Zhang X, Tu J (2020)
Diagnostic significance and carcinogenic mechanism of pan-cancer gene POU5F1 in liver hepatocellular carcinoma
Cancer Med, 9 (23), 8782-8800
DOI 10.1002/cam4.3486, PubMed 32978904

He D, Zhang X, Zhu X, Maharjan N, Wang Y, Luo P, Liang C, Tu J (2020)
Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
Front Oncol, 10, 609601
DOI 10.3389/fonc.2020.609601, PubMed 33344260

Hu X, Zhang X, Liu Z, Li S, Zheng X, Nie Y, Tao Y, Zhou X, Wu W, Yang G, Zhao Q, Zhang Y, Xu Q, Mou C (2020)
Exploration of key regulators driving primary feather follicle induction in goose skin
Gene, 731, 144338
DOI 10.1016/j.gene.2020.144338, PubMed 31923576

Jin Q, Zhang B, Zheng X, Li N, Xu L, Xie Y, Song F, Bhat EA, Chen Y, Gao N, Guo J, Zhang X, Ye S (2020)
Cryo-EM structures of human pannexin 1 channel
Cell Res, 30 (5), 449-451
DOI 10.1038/s41422-020-0310-0, PubMed 32246089

Khan EA, Zhang X, Hanna EM, Bartosova Z, Yadetie F, Jonassen I, Goksøyr A, Arukwe A (2020)
Quantitative transcriptomics, and lipidomics in evaluating ovarian developmental effects in Atlantic cod (Gadus morhua) caged at a capped marine waste disposal site
Environ Res, 189, 109906
DOI 10.1016/j.envres.2020.109906, PubMed 32980003

Khan EA, Zhang X, Hanna EM, Yadetie F, Jonassen I, Goksøyr A, Arukwe A (2020)
Application of quantitative transcriptomics in evaluating the ex vivo effects of per- and polyfluoroalkyl substances on Atlantic cod (Gadus morhua) ovarian physiology
Sci Total Environ, 755 (Pt 1), 142904
DOI 10.1016/j.scitotenv.2020.142904, PubMed 33138996

Liang B, Xiang Y, Zhang X, Wang C, Jin B, Zhao Y, Zheng F (2020)
Systematic Pharmacology and GEO Database Mining Revealed the Therapeutic Mechanism of Xuefu Zhuyu Decoration for Atherosclerosis Cardiovascular Disease
Front Cardiovasc Med, 7, 592201
DOI 10.3389/fcvm.2020.592201, PubMed 33425996

Lin Y, Lu L, Zhou M, Liu H, Ye P, Zhang W, Qiu J, Zhang Z, Yang X, Ding L, Guo W, Mo M, Zhu X, Zhang X, Chen X, Xu P (2020)
Association of CLU gene polymorphism with Parkinson's disease in the Chinese Han population
J Gene Med, e3302 (in press)
DOI 10.1002/jgm.3302, PubMed 33295114

Liu YT, Tao CL, Zhang X, Xia W, Shi DQ, Qi L, Xu C, Sun R, Li XW, Lau PM, Zhou ZH, Bi GQ (2020)
Mesophasic organization of GABAA receptors in hippocampal inhibitory synapses
Nat Neurosci, 23 (12), 1589-1596
DOI 10.1038/s41593-020-00729-w, PubMed 33139942

Rong J, Xu X, Xiang Y, Yang G, Ming X, He S, Liang B, Zhang X, Zheng F (2020)
Thioredoxin-interacting protein promotes activation and inflammation of monocytes with DNA demethylation in coronary artery disease
J Cell Mol Med, 24 (6), 3560-3571
DOI 10.1111/jcmm.15045, PubMed 32039564

Xiang Y, Liang B, Zhang X, Zheng F (2020)
Lower HDL-C levels are associated with higher expressions of CD16 on monocyte subsets in coronary atherosclerosis
Int J Med Sci, 17 (14), 2171-2179
DOI 10.7150/ijms.47998, PubMed 32922178

Xu M, Cao L, Zhang X, Zhuang Y, Zhang Y, Wang Q, Chen Y, Xu L, Sun G (2020)
miR‑3133 inhibits proliferation and angiogenesis by targeting the JUNB/VEGF pathway in human umbilical vein endothelial cells
Oncol Rep, 44 (4), 1699-1708
DOI 10.3892/or.2020.7715, PubMed 32945523

Zhang B, Jin Q, Xu L, Li N, Meng Y, Chang S, Zheng X, Wang J, Chen Y, Neculai D, Gao N, Zhang X, Yang F, Guo J, Ye S (2020)
Cooperative transport mechanism of human monocarboxylate transporter 2
Nat Commun, 11 (1), 2429
DOI 10.1038/s41467-020-16334-1, PubMed 32415067

Zhang L, Zhang X, Chang P, Yang J, Zheng D, Zhang D, Wen S, Jing S (2020)
A Novel Approach for Repairing Superior Mesenteric Artery Injury During Left Nephrectomy-6-year Follow-up
Urology, 144, 241-244
DOI 10.1016/j.urology.2020.07.017, PubMed 32717246

Zhang W, Gong J, Ding L, Zhang Z, Pan X, Chen X, Guo W, Zhang X, Yang X, Peng G, Lin Y, Gao F, Li Y, Zhu X, Xuan A, Wang S, Sun X, Zhang Y, Xu P (2020)
Functional validation of a human GLUD2 variant in a murine model of Parkinson's disease
Cell Death Dis, 11 (10), 897
DOI 10.1038/s41419-020-03043-2, PubMed 33093440

Zhang W, Zhou M, Lu W, Gong J, Gao F, Li Y, Xu X, Lin Y, Zhang X, Ding L, Zhang Z, Li G, Chen X, Sun X, Zhu X, Xu P, Zhang Y (2020)
CNTNAP4 deficiency in dopaminergic neurons initiates parkinsonian phenotypes
Theranostics, 10 (7), 3000-3021
DOI 10.7150/thno.40798, PubMed 32194851

Zhang X, Jonassen I (2020)
RASflow: an RNA-Seq analysis workflow with Snakemake
BMC Bioinformatics, 21 (1), 110
DOI 10.1186/s12859-020-3433-x, PubMed 32183729

Zhang X, Li B, Zhang Z, Chen Y, Tian S (2020)
Antagonistic Yeasts: A Promising Alternative to Chemical Fungicides for Controlling Postharvest Decay of Fruit
J Fungi (Basel), 6 (3)
DOI 10.3390/jof6030158, PubMed 32878102

Zhang X, Xiang Y, He D, Liang B, Wang C, Luo J, Zheng F (2020)
Identification of Potential Biomarkers for CAD Using Integrated Expression and Methylation Data
Front Genet, 11, 778
DOI 10.3389/fgene.2020.00778, PubMed 33033488

Zhang X, Zhang G, Huang H, Li H, Lin S, Wang Y (2020)
Differentially Expressed MicroRNAs in Radioresistant and Radiosensitive Atypical Meningioma: A Clinical Study in Chinese Patients
Front Oncol, 10, 501
DOI 10.3389/fonc.2020.00501, PubMed 32426270

Zhang X, Zhang Q, Liu Y, Wang B, Zhou S (2020)
A molecular device: A DNA molecular lock driven by the nicking enzymes
Comput Struct Biotechnol J, 18, 2107-2116
DOI 10.1016/j.csbj.2020.08.004, PubMed 32913580

Zhou M, Yang S, Wang X, Zhang X, Cen X, Mu G, Wang D, Ma J, Wang B, Chen W (2020)
The association between urinary aluminum and lung function among an urban adult population: A repeated-measure longitudinal study
Chemosphere, 270, 129443 (in press)
DOI 10.1016/j.chemosphere.2020.129443, PubMed 33401068

Publications 2019

Luo J, Zhang X, He S, Lou Q, Zhai G, Shi C, Yin Z, Zheng F (2019)
Deletion of narfl leads to increased oxidative stress mediated abnormal angiogenesis and digestive organ defects in zebrafish
Redox Biol, 28, 101355
DOI 10.1016/j.redox.2019.101355, PubMed 31677554

Peng X, Liu H, Chen P, Tang F, Hu Y, Wang F, Pi Z, Zhao M, Chen N, Chen H, Zhang X, Yan X, Liu M, Fu X, Zhao G, Yao P, Wang L, Dai H, Li X, Xiong W, Xu W, Zheng H, Yu H, Shen S (2019)
A Chromosome-Scale Genome Assembly of Paper Mulberry (Broussonetia papyrifera) Provides New Insights into Its Forage and Papermaking Usage
Mol Plant, 12 (5), 661-677
DOI 10.1016/j.molp.2019.01.021, PubMed 30822525

Tao Y, Zhou X, Liu Z, Zhang X, Nie Y, Zheng X, Li S, Hu X, Yang G, Zhao Q, Mou C (2019)
Expression patterns of three JAK-STAT pathway genes in feather follicle development during chicken embryogenesis
Gene Expr Patterns, 35, 119078
DOI 10.1016/j.gep.2019.119078, PubMed 31759166

Xing S, Xu X, Fu P, Xu M, Gao T, Zhang X, Zhao C (2019)
Colorimetric detection of single base-pair mismatches based on the interactions of PNA and PNA/DNA complexes with unmodified gold nanoparticles
Colloids Surf B Biointerfaces, 181, 333-340
DOI 10.1016/j.colsurfb.2019.05.069, PubMed 31154144

Xu X, Zhang Q, Hong J, Li Z, Zhang X, Zhou X (2019)
Cryo-EM Structure of a Begomovirus Geminate Particle
Int J Mol Sci, 20 (7)
DOI 10.3390/ijms20071738, PubMed 30965627

Zhang G, Xiao B, Huang H, Zhang Y, Zhang X, Zhang J, Wang Y (2019)
Intracranial synovial sarcoma: A clinical, radiological and pathological study of 16 cases
Eur J Surg Oncol, 45 (12), 2379-2385
DOI 10.1016/j.ejso.2019.08.015, PubMed 31445769

Zhang L, Zhang X, Wang Y, Xu P, Diao Z, Liu W, Xu W (2019)
Identification and characterization of protein phosphorylation in the soluble protein fraction of scallop (Chlamys farreri) byssus
Mol Biol Rep, 46 (5), 4943-4951
DOI 10.1007/s11033-019-04945-x, PubMed 31264161

Zhang Q, Ding J, Sun S, Liu H, Lu M, Wei X, Gao X, Zhang X, Fu Q, Zheng J (2019)
Akt inhibition at the initial stage of CAR-T preparation enhances the CAR-positive expression rate, memory phenotype and in vivo efficacy
Am J Cancer Res, 9 (11), 2379-2396
PubMed 31815041

Publications 2018

Li Y, Liu W, Long Z, Xu P, Sun Y, Zhang X, Ma S, Jiang N (2018)
Si@C Microsphere Composite with Multiple Buffer Structures for High-Performance Lithium-Ion Battery Anodes
Chemistry, 24 (49), 12912-12919
DOI 10.1002/chem.201801417, PubMed 29802660

Liu S, Xu L, Guan F, Liu YT, Cui Y, Zhang Q, Zheng X, Bi GQ, Zhou ZH, Zhang X, Ye S (2018)
Cryo-EM structure of the human α5β3 GABAA receptor
Cell Res, 28 (9), 958-961
DOI 10.1038/s41422-018-0077-8, PubMed 30140029

Xu P, Dai X, Wang D, Miao Y, Zhang X, Wang S, Teng L, Dong B, Bao Z, Wang S, Lyu Q, Liu W (2018)
The discovered chimeric protein plays the cohesive role to maintain scallop byssal root structural integrity
Sci Rep, 8 (1), 17082
DOI 10.1038/s41598-018-35265-y, PubMed 30459329

Yadetie F, Zhang X, Hanna EM, Aranguren-Abadía L, Eide M, Blaser N, Brun M, Jonassen I, Goksøyr A, Karlsen OA (2018)
RNA-Seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision-cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol
Aquat Toxicol, 201, 174-186
DOI 10.1016/j.aquatox.2018.06.003, PubMed 29929084

Zhang X, Dai X, Wang L, Miao Y, Xu P, Liang P, Dong B, Bao Z, Wang S, Lyu Q, Liu W (2018)
Characterization of an Atypical Metalloproteinase Inhibitors Like Protein (Sbp8-1) From Scallop Byssus
Front Physiol, 9, 597
DOI 10.3389/fphys.2018.00597, PubMed 29875695

Publications 2017

Chang L, Chen F, Zhang X, Kuang T, Li M, Hu J, Shi J, Lee LJ, Cheng H, Li Y (2017)
Synthetic Melanin E-Ink
ACS Appl Mater Interfaces, 9 (19), 16553-16560
DOI 10.1021/acsami.7b03890, PubMed 28452460

Li Y, Sun X, Hu X, Xun X, Zhang J, Guo X, Jiao W, Zhang L, Liu W, Wang J, Li J, Sun Y, Miao Y, Zhang X, Cheng T, Xu G, Fu X, Wang Y, Yu X, Huang X, Lu W, Lv J, Mu C, Wang D, Li X et al. (2017)
Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins
Nat Commun, 8 (1), 1721
DOI 10.1038/s41467-017-01927-0, PubMed 29167427

Xiang S, Yang P, Guo H, Zhang S, Zhang X, Zhu F, Li Y (2017)
Green Tea Makes Polyphenol Nanoparticles with Radical-Scavenging Activities
Macromol Rapid Commun, 38 (23)
DOI 10.1002/marc.201700446, PubMed 28921705

Publications 2016

Ou Y, Xia R, Kong F, Zhang X, Yu S, Jiang L, Zheng L, Lin L (2016)
Overexpression of DEK is an indicator of poor prognosis in patients with gastric adenocarcinoma
Oncol Lett, 11 (3), 1823-1828
DOI 10.3892/ol.2016.4147, PubMed 26998084

Zhang X, Peng Q, Li L, Li X (2016)
Recognition of alternatively spliced cassette exons based on a hybrid model
Biochem Biophys Res Commun, 471 (3), 368-72
DOI 10.1016/j.bbrc.2016.02.022, PubMed 26869516

Publications 2015

Dejnirattisai W, Wongwiwat W, Supasa S, Zhang X, Dai X, Rouvinsky A, Jumnainsong A, Edwards C, Quyen NT, Duangchinda T, Grimes JM, Tsai WY, Lai CY, Wang WK, Malasit P, Farrar J, Simmons CP, Zhou ZH, Rey FA, Mongkolsapaya J, Screaton GR (2015)
Corrigendum: A new class of highly potent, broadly neutralizing antibodies isolated from viremic patients infected with dengue virus
Nat Immunol, 16 (5), 544
DOI 10.1038/ni0515-544b, PubMed 25898199

Dejnirattisai W, Wongwiwat W, Supasa S, Zhang X, Dai X, Rouvinsky A, Jumnainsong A, Edwards C, Quyen NT, Duangchinda T, Grimes JM, Tsai WY, Lai CY, Wang WK, Malasit P, Farrar J, Simmons CP, Zhou ZH, Rey FA, Mongkolsapaya J, Screaton GR (2015)
Corrigendum: A new class of highly potent, broadly neutralizing antibodies isolated from viremic patients infected with dengue virus
Nat Immunol, 16 (7), 785
DOI 10.1038/ni0715-785a, PubMed 26086146

Zhang J, Ou Y, Ma Y, Zheng L, Zhang X, Xia R, Kong F, Shen Y, Wang S, Lin L (2015)
Clinical implications of insulin-like growth factor II mRNA-binding protein 3 expression in non-small cell lung carcinoma
Oncol Lett, 9 (4), 1927-1933
DOI 10.3892/ol.2015.2910, PubMed 25789070

Publications 2014

Dejnirattisai W, Wongwiwat W, Supasa S, Zhang X, Dai X, Rouvinski A, Jumnainsong A, Edwards C, Quyen NTH, Duangchinda T, Grimes JM, Tsai WY, Lai CY, Wang WK, Malasit P, Farrar J, Simmons CP, Zhou ZH, Rey FA, Mongkolsapaya J, Screaton GR (2014)
A new class of highly potent, broadly neutralizing antibodies isolated from viremic patients infected with dengue virus
Nat Immunol, 16 (2), 170-177
DOI 10.1038/ni.3058, PubMed 25501631

Publications 2012

Chen W, Liu Y, Wang H, Hnizdo E, Sun Y, Su L, Zhang X, Weng S, Bochmann F, Hearl FJ, Chen J, Wu T (2012)
Long-term exposure to silica dust and risk of total and cause-specific mortality in Chinese workers: a cohort study
PLoS Med, 9 (4), e1001206
DOI 10.1371/journal.pmed.1001206, PubMed 22529751

Wu C, Liu X, Wang Y, Tian H, Xie Y, Li Q, Zhang X, Liu F (2012)
Insulin-like factor binding protein-3 promotes the G1 cell cycle arrest in several cancer cell lines
Gene, 512 (1), 127-33
DOI 10.1016/j.gene.2012.09.080, PubMed 23041555

Zhang X, Ge P, Yu X, Brannan JM, Bi G, Zhang Q, Schein S, Zhou ZH (2012)
Cryo-EM structure of the mature dengue virus at 3.5-Å resolution
Nat Struct Mol Biol, 20 (1), 105-10
DOI 10.1038/nsmb.2463, PubMed 23241927

Publications 2010

Zhang X, Boyce M, Bhattacharya B, Zhang X, Schein S, Roy P, Zhou ZH (2010)
Bluetongue virus coat protein VP2 contains sialic acid-binding domains, and VP5 resembles enveloped virus fusion proteins
Proc Natl Acad Sci U S A, 107 (14), 6292-7
DOI 10.1073/pnas.0913403107, PubMed 20332209

Zhang X, Zhang X, Zhou ZH (2010)
Low cost, high performance GPU computing solution for atomic resolution cryoEM single-particle reconstruction
J Struct Biol, 172 (3), 400-6
DOI 10.1016/j.jsb.2010.05.006, PubMed 20493949

Publications 2009

Cheng L, Zhu J, Hui WH, Zhang X, Honig B, Fang Q, Zhou ZH (2009)
Backbone model of an aquareovirus virion by cryo-electron microscopy and bioinformatics
J Mol Biol, 397 (3), 852-63
DOI 10.1016/j.jmb.2009.12.027, PubMed 20036256

Publications 2008

Zhang X, Wang H, Zhu X, Liu Y, Wang L, Dai Q, Cai N, Wu T, Chen W (2008)
Cohort mortality study in three ceramic factories in Jingdezhen in China
J Huazhong Univ Sci Technolog Med Sci, 28 (4), 386-90
DOI 10.1007/s11596-008-0404-2, PubMed 18704297

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