
Xiaokang Zhang
- Postdoc; PhD
Publications 2020
Designing Uncorrelated Address Constrain for DNA Storage by DMVO Algorithm
IEEE/ACM Trans Comput Biol Bioinform, PP (in press)
DOI 10.1109/TCBB.2020.3011582, PubMed 32750895
Proteomics and lipidomics analyses reveal modulation of lipid metabolism by perfluoroalkyl substances in liver of Atlantic cod (Gadus morhua)
Aquat Toxicol, 227, 105590
DOI 10.1016/j.aquatox.2020.105590, PubMed 32891021
A peptide nucleic acid-regulated fluorescence resonance energy transfer DNA assay based on the use of carbon dots and gold nanoparticles
Mikrochim Acta, 187 (7), 375
DOI 10.1007/s00604-020-04357-w, PubMed 32518969
ReCodLiver0.9: Overcoming Challenges in Genome-Scale Metabolic Reconstruction of a Non-model Species
Front Mol Biosci, 7, 591406
DOI 10.3389/fmolb.2020.591406, PubMed 33324679
Diagnostic significance and carcinogenic mechanism of pan-cancer gene POU5F1 in liver hepatocellular carcinoma
Cancer Med, 9 (23), 8782-8800
DOI 10.1002/cam4.3486, PubMed 32978904
Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
Front Oncol, 10, 609601
DOI 10.3389/fonc.2020.609601, PubMed 33344260
Exploration of key regulators driving primary feather follicle induction in goose skin
Gene, 731, 144338
DOI 10.1016/j.gene.2020.144338, PubMed 31923576
Cryo-EM structures of human pannexin 1 channel
Cell Res, 30 (5), 449-451
DOI 10.1038/s41422-020-0310-0, PubMed 32246089
Quantitative transcriptomics, and lipidomics in evaluating ovarian developmental effects in Atlantic cod (Gadus morhua) caged at a capped marine waste disposal site
Environ Res, 189, 109906
DOI 10.1016/j.envres.2020.109906, PubMed 32980003
Application of quantitative transcriptomics in evaluating the ex vivo effects of per- and polyfluoroalkyl substances on Atlantic cod (Gadus morhua) ovarian physiology
Sci Total Environ, 755 (Pt 1), 142904
DOI 10.1016/j.scitotenv.2020.142904, PubMed 33138996
Systematic Pharmacology and GEO Database Mining Revealed the Therapeutic Mechanism of Xuefu Zhuyu Decoration for Atherosclerosis Cardiovascular Disease
Front Cardiovasc Med, 7, 592201
DOI 10.3389/fcvm.2020.592201, PubMed 33425996
Association of CLU gene polymorphism with Parkinson's disease in the Chinese Han population
J Gene Med, e3302 (in press)
DOI 10.1002/jgm.3302, PubMed 33295114
Mesophasic organization of GABAA receptors in hippocampal inhibitory synapses
Nat Neurosci, 23 (12), 1589-1596
DOI 10.1038/s41593-020-00729-w, PubMed 33139942
Thioredoxin-interacting protein promotes activation and inflammation of monocytes with DNA demethylation in coronary artery disease
J Cell Mol Med, 24 (6), 3560-3571
DOI 10.1111/jcmm.15045, PubMed 32039564
Lower HDL-C levels are associated with higher expressions of CD16 on monocyte subsets in coronary atherosclerosis
Int J Med Sci, 17 (14), 2171-2179
DOI 10.7150/ijms.47998, PubMed 32922178
miR‑3133 inhibits proliferation and angiogenesis by targeting the JUNB/VEGF pathway in human umbilical vein endothelial cells
Oncol Rep, 44 (4), 1699-1708
DOI 10.3892/or.2020.7715, PubMed 32945523
Cooperative transport mechanism of human monocarboxylate transporter 2
Nat Commun, 11 (1), 2429
DOI 10.1038/s41467-020-16334-1, PubMed 32415067
A Novel Approach for Repairing Superior Mesenteric Artery Injury During Left Nephrectomy-6-year Follow-up
Urology, 144, 241-244
DOI 10.1016/j.urology.2020.07.017, PubMed 32717246
Functional validation of a human GLUD2 variant in a murine model of Parkinson's disease
Cell Death Dis, 11 (10), 897
DOI 10.1038/s41419-020-03043-2, PubMed 33093440
CNTNAP4 deficiency in dopaminergic neurons initiates parkinsonian phenotypes
Theranostics, 10 (7), 3000-3021
DOI 10.7150/thno.40798, PubMed 32194851
RASflow: an RNA-Seq analysis workflow with Snakemake
BMC Bioinformatics, 21 (1), 110
DOI 10.1186/s12859-020-3433-x, PubMed 32183729
Antagonistic Yeasts: A Promising Alternative to Chemical Fungicides for Controlling Postharvest Decay of Fruit
J Fungi (Basel), 6 (3)
DOI 10.3390/jof6030158, PubMed 32878102
Identification of Potential Biomarkers for CAD Using Integrated Expression and Methylation Data
Front Genet, 11, 778
DOI 10.3389/fgene.2020.00778, PubMed 33033488
Differentially Expressed MicroRNAs in Radioresistant and Radiosensitive Atypical Meningioma: A Clinical Study in Chinese Patients
Front Oncol, 10, 501
DOI 10.3389/fonc.2020.00501, PubMed 32426270
A molecular device: A DNA molecular lock driven by the nicking enzymes
Comput Struct Biotechnol J, 18, 2107-2116
DOI 10.1016/j.csbj.2020.08.004, PubMed 32913580
The association between urinary aluminum and lung function among an urban adult population: A repeated-measure longitudinal study
Chemosphere, 270, 129443 (in press)
DOI 10.1016/j.chemosphere.2020.129443, PubMed 33401068
Publications 2019
Deletion of narfl leads to increased oxidative stress mediated abnormal angiogenesis and digestive organ defects in zebrafish
Redox Biol, 28, 101355
DOI 10.1016/j.redox.2019.101355, PubMed 31677554
A Chromosome-Scale Genome Assembly of Paper Mulberry (Broussonetia papyrifera) Provides New Insights into Its Forage and Papermaking Usage
Mol Plant, 12 (5), 661-677
DOI 10.1016/j.molp.2019.01.021, PubMed 30822525
Expression patterns of three JAK-STAT pathway genes in feather follicle development during chicken embryogenesis
Gene Expr Patterns, 35, 119078
DOI 10.1016/j.gep.2019.119078, PubMed 31759166
Colorimetric detection of single base-pair mismatches based on the interactions of PNA and PNA/DNA complexes with unmodified gold nanoparticles
Colloids Surf B Biointerfaces, 181, 333-340
DOI 10.1016/j.colsurfb.2019.05.069, PubMed 31154144
Cryo-EM Structure of a Begomovirus Geminate Particle
Int J Mol Sci, 20 (7)
DOI 10.3390/ijms20071738, PubMed 30965627
Intracranial synovial sarcoma: A clinical, radiological and pathological study of 16 cases
Eur J Surg Oncol, 45 (12), 2379-2385
DOI 10.1016/j.ejso.2019.08.015, PubMed 31445769
Identification and characterization of protein phosphorylation in the soluble protein fraction of scallop (Chlamys farreri) byssus
Mol Biol Rep, 46 (5), 4943-4951
DOI 10.1007/s11033-019-04945-x, PubMed 31264161
Akt inhibition at the initial stage of CAR-T preparation enhances the CAR-positive expression rate, memory phenotype and in vivo efficacy
Am J Cancer Res, 9 (11), 2379-2396
PubMed 31815041
Publications 2018
Si@C Microsphere Composite with Multiple Buffer Structures for High-Performance Lithium-Ion Battery Anodes
Chemistry, 24 (49), 12912-12919
DOI 10.1002/chem.201801417, PubMed 29802660
Cryo-EM structure of the human α5β3 GABAA receptor
Cell Res, 28 (9), 958-961
DOI 10.1038/s41422-018-0077-8, PubMed 30140029
The discovered chimeric protein plays the cohesive role to maintain scallop byssal root structural integrity
Sci Rep, 8 (1), 17082
DOI 10.1038/s41598-018-35265-y, PubMed 30459329
RNA-Seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision-cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol
Aquat Toxicol, 201, 174-186
DOI 10.1016/j.aquatox.2018.06.003, PubMed 29929084
Characterization of an Atypical Metalloproteinase Inhibitors Like Protein (Sbp8-1) From Scallop Byssus
Front Physiol, 9, 597
DOI 10.3389/fphys.2018.00597, PubMed 29875695
Publications 2017
Synthetic Melanin E-Ink
ACS Appl Mater Interfaces, 9 (19), 16553-16560
DOI 10.1021/acsami.7b03890, PubMed 28452460
Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins
Nat Commun, 8 (1), 1721
DOI 10.1038/s41467-017-01927-0, PubMed 29167427
Green Tea Makes Polyphenol Nanoparticles with Radical-Scavenging Activities
Macromol Rapid Commun, 38 (23)
DOI 10.1002/marc.201700446, PubMed 28921705
Publications 2016
Overexpression of DEK is an indicator of poor prognosis in patients with gastric adenocarcinoma
Oncol Lett, 11 (3), 1823-1828
DOI 10.3892/ol.2016.4147, PubMed 26998084
Recognition of alternatively spliced cassette exons based on a hybrid model
Biochem Biophys Res Commun, 471 (3), 368-72
DOI 10.1016/j.bbrc.2016.02.022, PubMed 26869516
Publications 2015
Corrigendum: A new class of highly potent, broadly neutralizing antibodies isolated from viremic patients infected with dengue virus
Nat Immunol, 16 (5), 544
DOI 10.1038/ni0515-544b, PubMed 25898199
Corrigendum: A new class of highly potent, broadly neutralizing antibodies isolated from viremic patients infected with dengue virus
Nat Immunol, 16 (7), 785
DOI 10.1038/ni0715-785a, PubMed 26086146
Clinical implications of insulin-like growth factor II mRNA-binding protein 3 expression in non-small cell lung carcinoma
Oncol Lett, 9 (4), 1927-1933
DOI 10.3892/ol.2015.2910, PubMed 25789070
Publications 2014
A new class of highly potent, broadly neutralizing antibodies isolated from viremic patients infected with dengue virus
Nat Immunol, 16 (2), 170-177
DOI 10.1038/ni.3058, PubMed 25501631
Publications 2012
Long-term exposure to silica dust and risk of total and cause-specific mortality in Chinese workers: a cohort study
PLoS Med, 9 (4), e1001206
DOI 10.1371/journal.pmed.1001206, PubMed 22529751
Insulin-like factor binding protein-3 promotes the G1 cell cycle arrest in several cancer cell lines
Gene, 512 (1), 127-33
DOI 10.1016/j.gene.2012.09.080, PubMed 23041555
Cryo-EM structure of the mature dengue virus at 3.5-Å resolution
Nat Struct Mol Biol, 20 (1), 105-10
DOI 10.1038/nsmb.2463, PubMed 23241927
Publications 2010
Bluetongue virus coat protein VP2 contains sialic acid-binding domains, and VP5 resembles enveloped virus fusion proteins
Proc Natl Acad Sci U S A, 107 (14), 6292-7
DOI 10.1073/pnas.0913403107, PubMed 20332209
Low cost, high performance GPU computing solution for atomic resolution cryoEM single-particle reconstruction
J Struct Biol, 172 (3), 400-6
DOI 10.1016/j.jsb.2010.05.006, PubMed 20493949
Publications 2009
Backbone model of an aquareovirus virion by cryo-electron microscopy and bioinformatics
J Mol Biol, 397 (3), 852-63
DOI 10.1016/j.jmb.2009.12.027, PubMed 20036256
Publications 2008
Cohort mortality study in three ceramic factories in Jingdezhen in China
J Huazhong Univ Sci Technolog Med Sci, 28 (4), 386-90
DOI 10.1007/s11596-008-0404-2, PubMed 18704297