Publications by Gregor D. Gilfillan

50 publications found

1. Nørstebø SF, Rodriguez-Campos S, Umu ÖCO, Abril-Parreño L, Dalland M, Gilfillan GD, Fair S, Krogenaes A (2025)
   The cervical microbiome of ewe breeds with known divergent fertility following artificial insemination with frozen-thawed semen
   15 (1), 14614
   DOI 10.1038/s41598-025-97735-4, PubMed 40287436
2. Glenna S, Birkeland EE, Orr RJ, Gilfillan GD, Dalland M, Økstad OA, Voie ØA, Rounge TB (2025)
   Skin bacterial community dynamics of hands and forearms before and after military field exercise
   13 (5), e0295324 (in press)
   DOI 10.1128/spectrum.02953-24, PubMed 40231684
3. Bai X, Rayner S, Skuggen LE, Engseth KK, Bjørnstad PM, Dalland M, Gilfillan GD, Bjørås M, Matussek A (2025)
   A preliminary evaluation of a fast, low-cost, and high-throughput nucleic acid extraction method for bacterial microbiota profiling in low-microbial biomass samples
   15 (1), 2005
   DOI 10.1038/s41598-024-84682-9, PubMed 39814772
4. Aanes H, Vigeland MD, Star B, Gilfillan GD, Mattingsdal M, Trøan S, Strand M, Eide LM, Hanssen EN (2024)
   Heating up three cold cases in Norway using investigative genetic genealogy
   76, 103217
   DOI 10.1016/j.fsigen.2024.103217, PubMed 39787642
5. Bjørnstad PM, Aaløkken R, Åsheim J, Sundaram AYM, Felde CN, Østby GH, Dalland M, Sjursen W, Carrizosa C, Vigeland MD, Sorte HS, Sheng Y, Ariansen SL, Grindedal EM, Gilfillan GD (2024)
   Publisher Correction: A 39 kb structural variant causing Lynch syndrome detected by optical genome mapping and nanopore sequencing
   32 (5), 601-602
   DOI 10.1038/s41431-023-01519-1, PubMed 38172175
6. Bjørnstad PM, Aaløkken R, Åsheim J, Sundaram AYM, Felde CN, Østby GH, Dalland M, Sjursen W, Carrizosa C, Vigeland MD, Sorte HS, Sheng Y, Ariansen SL, Grindedal EM, Gilfillan GD (2023)
   A 39 kb structural variant causing Lynch Syndrome detected by optical genome mapping and nanopore sequencing
   32 (5), 513-520
   DOI 10.1038/s41431-023-01494-7, PubMed 38030917
7. Lekva T, Sundaram AYF, Roland MCP, Åsheim J, Michelsen AE, Norwitz ER, Aukrust P, Gilfillan GD, Ueland T (2023)
   Platelet and mitochondrial RNA is decreased in plasma-derived extracellular vesicles in women with preeclampsia-an exploratory study
   21 (1), 458
   DOI 10.1186/s12916-023-03178-x, PubMed 37996819
8. Diaz-Lundahl S, Nørstebø SF, Klem TB, Gilfillan GD, Dalland M, Gillund P, Krogenæs A (2023)
   The microbiota of uterine biopsies, cytobrush and vaginal swabs at artificial insemination in Norwegian red cows
   209, 115-125
   DOI 10.1016/j.theriogenology.2023.06.024, PubMed 37390751
9. Soares JZ, Valeur J, Šaltytė Benth J, Knapskog AB, Selbæk G, Arefi G, Gilfillan GD, Tollisen A, Bogdanovic N, Pettersen R (2022)
   Vitamin D in Alzheimer's Disease: Low Levels in Cerebrospinal Fluid Despite Normal Amounts in Serum
   86 (3), 1301-1314
   DOI 10.3233/JAD-215536, PubMed 35180126
10. Ribarska T, Bjørnstad PM, Sundaram AYM, Gilfillan GD (2022)
    Optimization of enzymatic fragmentation is crucial to maximize genome coverage: a comparison of library preparation methods for Illumina sequencing
    23 (1), 92
    DOI 10.1186/s12864-022-08316-y, PubMed 35105301
11. Diaz-Lundahl S, Sundaram AYM, Gillund P, Gilfillan GD, Olsaker I, Krogenæs A (2022)
    Gene Expression in Embryos From Norwegian Red Bulls With High or Low Non Return Rate: An RNA-Seq Study of in vivo-Produced Single Embryos
    12, 780113
    DOI 10.3389/fgene.2021.780113, PubMed 35096004
12. Holmgren A, Hansson L, Bjerkaas-Kjeldal K, Impellizzeri AAR, Gilfillan GD, Djurovic S, Hughes T (2022)
    Mapping the expression of an ANK3 isoform associated with bipolar disorder in the human brain
    12 (1), 45
    DOI 10.1038/s41398-022-01784-6, PubMed 35091539
13. Tønne E, Due-Tønnessen BJ, Vigeland MD, Amundsen SS, Ribarska T, Åsten PM, Sheng Y, Helseth E, Gilfillan GD, Mero IL, Heimdal KR (2022)
    Whole-exome sequencing in syndromic craniosynostosis increases diagnostic yield and identifies candidate genes in osteogenic signaling pathways
    188 (5), 1464-1475
    DOI 10.1002/ajmg.a.62663, PubMed 35080095
14. Kaitetzidou E, Gilfillan GD, Antonopoulou E, Sarropoulou E (2021)
    Sex-biased dynamics of three-spined stickleback (Gasterosteus aculeatus) gene expression patterns
    114 (1), 266-277
    DOI 10.1016/j.ygeno.2021.12.010, PubMed 34933072
15. Lind A, Barlinn R, Landaas ET, Andresen LL, Jakobsen K, Fladeby C, Nilsen M, Bjørnstad PM, Sundaram AYM, Ribarska T, Müller F, Gilfillan GD, Holberg-Petersen M (2021)
    Rapid SARS-CoV-2 variant monitoring using PCR confirmed by whole genome sequencing in a high-volume diagnostic laboratory
    141, 104906
    DOI 10.1016/j.jcv.2021.104906, PubMed 34273860
16. Heinicke F, Zhong X, Zucknick M, Breidenbach J, Sundaram AYM, T Flåm S, Leithaug M, Dalland M, Rayner S, Lie BA, Gilfillan GD (2020)
    An extension to: Systematic assessment of commercially available low-input miRNA library preparation kits
    17 (9), 1284-1292
    DOI 10.1080/15476286.2020.1761081, PubMed 32436772
17. Heinicke F, Zhong X, Zucknick M, Breidenbach J, Sundaram AYM, T Flåm S, Leithaug M, Dalland M, Farmer A, Henderson JM, Hussong MA, Moll P, Nguyen L, McNulty A, Shaffer JM, Shore S, Yip HK, Vitkovska J, Rayner S, Lie BA, Gilfillan GD (2019)
    Systematic assessment of commercially available low-input miRNA library preparation kits
    17 (1), 75-86
    DOI 10.1080/15476286.2019.1667741, PubMed 31559901
18. Fosslie M, Manaf A, Lerdrup M, Hansen K, Gilfillan GD, Dahl JA (2019)
    Going low to reach high: Small-scale ChIP-seq maps new terrain
    12 (1), e1465
    DOI 10.1002/wsbm.1465, PubMed 31478357
19. Cernilogar FM, Hasenöder S, Wang Z, Scheibner K, Burtscher I, Sterr M, Smialowski P, Groh S, Evenroed IM, Gilfillan GD, Lickert H, Schotta G (2019)
    Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2
    47 (17), 9069-9086
    DOI 10.1093/nar/gkz627, PubMed 31350899
20. Furi L, Crawford LA, Rangel-Pineros G, Manso AS, De Ste Croix M, Haigh RD, Kwun MJ, Engelsen Fjelland K, Gilfillan GD, Bentley SD, Croucher NJ, Clokie MR, Oggioni MR (2019)
    Methylation Warfare: Interaction of Pneumococcal Bacteriophages with Their Host
    201 (19)
    DOI 10.1128/JB.00370-19, PubMed 31285240
21. Eguíluz-Gracia I, Malmstrom K, Dheyauldeen SA, Lohi J, Sajantila A, Aaløkken R, Sundaram AYM, Gilfillan GD, Makela M, Baekkevold ES, Jahnsen FL (2018)
    Monocytes accumulate in the airways of children with fatal asthma
    48 (12), 1631-1639
    DOI 10.1111/cea.13265, PubMed 30184280
22. Santoro F, Pettini E, Kazmin D, Ciabattini A, Fiorino F, Gilfillan GD, Evenroed IM, Andersen P, Pozzi G, Medaglini D (2018)
    Transcriptomics of the Vaccine Immune Response: Priming With Adjuvant Modulates Recall Innate Responses After Boosting
    9, 1248
    DOI 10.3389/fimmu.2018.01248, PubMed 29922291
23. Wilkinson D, Váchová L, Hlaváček O, Maršíková J, Gilfillan GD, Palková Z (2018)
    Long Noncoding RNAs in Yeast Cells and Differentiated Subpopulations of Yeast Colonies and Biofilms
    2018, 4950591
    DOI 10.1155/2018/4950591, PubMed 29765496
24. Segorbe D, Wilkinson D, Mizeranschi A, Hughes T, Aaløkken R, Váchová L, Palková Z, Gilfillan GD (2018)
    An optimized FAIRE procedure for low cell numbers in yeast
    35 (8), 507-512
    DOI 10.1002/yea.3316, PubMed 29577419
25. Wilkinson D, Maršíková J, Hlaváček O, Gilfillan GD, Ježková E, Aaløkken R, Váchová L, Palková Z (2018)
    Transcriptome Remodeling of Differentiated Cells during Chronological Ageing of Yeast Colonies: New Insights into Metabolic Differentiation
    2018, 4932905
    DOI 10.1155/2018/4932905, PubMed 29576850
26. Stüken A, Haverkamp THA, Dirven HAAM, Gilfillan GD, Leithaug M, Lund V (2018)
    Microbial Community Composition of Tap Water and Biofilms Treated with or without Copper-Silver Ionization
    52 (6), 3354-3364
    DOI 10.1021/acs.est.7b05963, PubMed 29461810
27. Dahl JA, Gilfillan GD (2018)
    How low can you go? Pushing the limits of low-input ChIP-seq
    17 (2), 89-95
    DOI 10.1093/bfgp/elx037, PubMed 29087438
28. Ribarska T, Gilfillan GD (2018)
    Native Chromatin Immunoprecipitation-Sequencing (ChIP-Seq) from Low Cell Numbers
    1689, 157-166
    DOI 10.1007/978-1-4939-7380-4_14, PubMed 29027173
29. de Muinck EJ, Trosvik P, Gilfillan GD, Hov JR, Sundaram AYM (2017)
    A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform
    5 (1), 68
    DOI 10.1186/s40168-017-0279-1, PubMed 28683838
30. Lee S, Norheim F, Gulseth HL, Langleite TM, Kolnes KJ, Tangen DS, Stadheim HK, Gilfillan GD, Holen T, Birkeland KI, Jensen J, Drevon CA (2017)
    Interaction between plasma fetuin-A and free fatty acids predicts changes in insulin sensitivity in response to long-term exercise
    5 (5)
    DOI 10.14814/phy2.13183, PubMed 28270597
31. Lee S, Norheim F, Langleite TM, Noreng HJ, Storås TH, Afman LA, Frost G, Bell JD, Thomas EL, Kolnes KJ, Tangen DS, Stadheim HK, Gilfillan GD, Gulseth HL, Birkeland KI, Jensen J, Drevon CA, Holen T, NutriTech Consortium (2016)
    Effect of energy restriction and physical exercise intervention on phenotypic flexibility as examined by transcriptomics analyses of mRNA from adipose tissue and whole body magnetic resonance imaging
    4 (21)
    DOI 10.14814/phy2.13019, PubMed 27821717
32. Sundaram AY, Hughes T, Biondi S, Bolduc N, Bowman SK, Camilli A, Chew YC, Couture C, Farmer A, Jerome JP, Lazinski DW, McUsic A, Peng X, Shazand K, Xu F, Lyle R, Gilfillan GD (2016)
    A comparative study of ChIP-seq sequencing library preparation methods
    17 (1), 816
    DOI 10.1186/s12864-016-3135-y, PubMed 27769162
33. Beulig F, Urich T, Nowak M, Trumbore SE, Gleixner G, Gilfillan GD, Fjelland KE, Küsel K (2016)
    Altered carbon turnover processes and microbiomes in soils under long-term extremely high CO2 exposure
    1, 15025
    DOI 10.1038/nmicrobiol.2015.25, PubMed 27571979
34. Sarropoulou E, Tsalafouta A, Sundaram AY, Gilfillan GD, Kotoulas G, Papandroulakis N, Pavlidis M (2016)
    Transcriptomic changes in relation to early-life events in the gilthead sea bream (Sparus aurata)
    17, 506
    DOI 10.1186/s12864-016-2874-0, PubMed 27461489
35. Trucchi E, Mazzarella AB, Gilfillan GD, Lorenzo MT, Schönswetter P, Paun O (2016)
    BsRADseq: screening DNA methylation in natural populations of non-model species
    25 (8), 1697-713
    DOI 10.1111/mec.13550, PubMed 26818626
36. Moreno-Mayar JV, Rasmussen S, Seguin-Orlando A, Rasmussen M, Liang M, Flåm ST, Lie BA, Gilfillan GD, Nielsen R, Thorsby E, Willerslev E, Malaspinas AS (2014)
    Genome-wide ancestry patterns in Rapanui suggest pre-European admixture with Native Americans
    24 (21), 2518-25
    DOI 10.1016/j.cub.2014.09.057, PubMed 25447991
37. Squadrito ML, Baer C, Burdet F, Maderna C, Gilfillan GD, Lyle R, Ibberson M, De Palma M (2014)
    Endogenous RNAs modulate microRNA sorting to exosomes and transfer to acceptor cells
    8 (5), 1432-46
    DOI 10.1016/j.celrep.2014.07.035, PubMed 25159140
38. Star B, Nederbragt AJ, Hansen MH, Skage M, Gilfillan GD, Bradbury IR, Pampoulie C, Stenseth NC, Jakobsen KS, Jentoft S (2014)
    Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA
    9 (3), e89676
    DOI 10.1371/journal.pone.0089676, PubMed 24608104
39. Gilfillan GD, Hughes T, Sheng Y, Hjorthaug HS, Straub T, Gervin K, Harris JR, Undlien DE, Lyle R (2012)
    Limitations and possibilities of low cell number ChIP-seq
    13, 645
    DOI 10.1186/1471-2164-13-645, PubMed 23171294
40. Leidenroth A, Sorte HS, Gilfillan G, Ehrlich M, Lyle R, Hewitt JE (2012)
    Diagnosis by sequencing: correction of misdiagnosis from FSHD2 to LGMD2A by whole-exome analysis
    20 (9), 999-1003
    DOI 10.1038/ejhg.2012.42, PubMed 22378277
41. Selmer KK, Gilfillan GD, Strømme P, Lyle R, Hughes T, Hjorthaug HS, Brandal K, Nakken S, Misceo D, Egeland T, Munthe LA, Braekken SK, Undlien DE (2011)
    A mild form of Mucopolysaccharidosis IIIB diagnosed with targeted next-generation sequencing of linked genomic regions
    20 (1), 58-63
    DOI 10.1038/ejhg.2011.126, PubMed 21712855
42. Skinningsrud B, Husebye ES, Gilfillan GD, Frengen E, Erichsen A, Gervin K, Ormerod E, Egeland T, Undlien DE (2009)
    X-linked congenital adrenal hypoplasia with hypogonadotropic hypogonadism caused by an inversion disrupting a conserved noncoding element upstream of the NR0B1 (DAX1) gene
    94 (10), 4086-93
    DOI 10.1210/jc.2009-0923, PubMed 19773398
43. Roxrud I, Raiborg C, Gilfillan GD, Strømme P, Stenmark H (2009)
    Dual degradation mechanisms ensure disposal of NHE6 mutant protein associated with neurological disease
    315 (17), 3014-27
    DOI 10.1016/j.yexcr.2009.07.012, PubMed 19619532
44. Gilfillan GD, Selmer KK, Roxrud I, Smith R, Kyllerman M, Eiklid K, Kroken M, Mattingsdal M, Egeland T, Stenmark H, Sjøholm H, Server A, Samuelsson L, Christianson A, Tarpey P, Whibley A, Stratton MR, Futreal PA, Teague J, Edkins S, Gecz J, Turner G, Raymond FL, Schwartz C, Stevenson RE et al. (2008)
    SLC9A6 mutations cause X-linked mental retardation, microcephaly, epilepsy, and ataxia, a phenotype mimicking Angelman syndrome
    82 (4), 1003-10
    DOI 10.1016/j.ajhg.2008.01.013, PubMed 18342287
45. Pena-Diaz J, Hegre SA, Anderssen E, Aas PA, Mjelle R, Gilfillan GD, Lyle R, Drablos F, Krokan HE, Saetrom P (2013)
    Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication
    Nucleic Acids Res., 41 (5), 2846-2856
    DOI 10.1093/nar/gks1336
46. Bartkuhn M, Straub T, Herold M, Herrmann M, Rathke C, Saumweber H, Gilfillan GD, Becker PB, Renkawitz R (2009)
    Active promoters and insulators are marked by the centrosomal protein 190
    Embo J., 28 (7), 877-888
    DOI 10.1038/emboj.2009.34
47. Marsikova J, Wilkinson D, Hlavacek O, Gilfillan GD, Mizeranschi A, Hughes T, Begany M, Resetarova S, Vachova L, Palkova Z (2017)
    Metabolic differentiation of surface and invasive cells of yeast colony biofilms revealed by gene expression profiling
    BMC Genomics, 18, 814
    DOI 10.1186/s12864-017-4214-4
48. Squadrito ML, Pucci F, Magri L, Moi D, Gilfillan GD, Ranghetti A, Casazza A, Mazzone M, Lyle R, Naldini L, De Palma M (2012)
    miR-511-3p Modulates Genetic Programs of Tumor-Associated Macrophages
    Cell Reports, 1 (2), 141-154
    DOI 10.1016/j.celrep.2011.12.005
49. Sarropoulou E, Sundaram AYM, Kaitetzidou E, Kotoulas G, Gilfillan GD, Papandroulakis N, Mylonas CC, Magoulas A (2017)
    Full genome survey and dynamics of gene expression in the greater amberjack Seriola dumerili
    GigaScience, 6 (12)
    DOI 10.1093/gigascience/gix108
50. Straub T, Zabel A, Gilfillan GD, Feller C, Becker PB (2013)
    Different chromatin interfaces of the Drosophila dosage compensation complex revealed by high-shear ChIP-seq
    Genome Res., 23 (3), 473-485
    DOI 10.1101/gr.146407.112