Research projects overview
Decoding the Cancer Stem Cell Niche in Triple-Negative Breast Cancer
- Project funded by the Norwegian Research Council through the Researcher Project for Young Talents (FRIPRO) call.
Link to project (forskningsradet.no)
EcoTyper: a framework for the systematic identification of cell states and cellular communities (ecotypes) from bulk, single-cell and spatially-resolved gene expression data.
- EcoTyper website and GitHub
- Carcinoma EcoTyper (Luca & Steen et al., Cell 2021) [https://www.ncbi.nlm.nih.gov/
pmc/articles/PMC8526411/] - Lymphoma EcoTyper (Steen & Luca et al., Cancer Cell 2021) [https://www.ncbi.nlm.nih.gov/
pmc/articles/PMC9205168/]
CytoSPACE: High-resolution alignment of single-cell and spatial transcriptomes
- CytoSPACE GitHub
- Vahid, Brown & Steen et al., Nature Biotech. 2023 [https://www.nature.com/
articles/s41587-023-01697-9]