Publications by Lars O. Baumbusch

44 publications found

  1. Przybyła W, Gjersvoll Paulsen KM, Mishra CK, Nygård S, Engebretsen S, Ruud E, Trøen G, Beiske K, Baumbusch LO (2024)
    Correction: Whole exome sequencing of high-risk neuroblastoma identifies novel non-synonymous variants
    PLoS One, 19 (7), e0306687
    DOI 10.1371/journal.pone.0306687, PubMed 38950054
  2. Grebstad Tune B, Sareen H, Powter B, Kahana-Edwin S, Cooper A, Koh ES, Lee CS, Po JW, McCowage G, Dexter M, Cain L, O'Neill G, Prior V, Karpelowsky J, Tsoli M, Baumbusch LO, Ziegler D, Roberts TL, DeSouza P, Becker TM, Ma Y (2023)
    From Pediatric to Adult Brain Cancer: Exploring Histone H3 Mutations in Australian Brain Cancer Patients
    Biomedicines, 11 (11)
    DOI 10.3390/biomedicines11112907, PubMed 38001908
  3. Grebstad Tune B, Melheim M, Åsegg-Atneosen M, Dotinga B, Saugstad OD, Solberg R, Baumbusch LO (2023)
    Long Non-Coding RNAs in Hypoxia and Oxidative Stress: Novel Insights Investigating a Piglet Model of Perinatal Asphyxia
    Biology (Basel), 12 (4)
    DOI 10.3390/biology12040549, PubMed 37106749
  4. Bitenc M, Grebstad Tune B, Melheim M, Atneosen-Åsegg M, Lai X, Rajar P, Solberg R, Baumbusch LO (2022)
    Assessing nuclear versus mitochondrial cell-free DNA (cfDNA) by qRT-PCR and droplet digital PCR using a piglet model of perinatal asphyxia
    Mol Biol Rep, 50 (2), 1533-1544
    DOI 10.1007/s11033-022-08135-0, PubMed 36512170
  5. Przybyła W, Gjersvoll Paulsen KM, Mishra CK, Nygård S, Engebretsen S, Ruud E, Trøen G, Beiske K, Baumbusch LO (2022)
    Whole exome sequencing of high-risk neuroblastoma identifies novel non-synonymous variants
    PLoS One, 17 (8), e0273280
    DOI 10.1371/journal.pone.0273280, PubMed 36037157
  6. Hermansen JU, Wojcik DM, Robinson N, Pahnke J, Haugland HK, Jamtøy AH, Flaegstad T, Halvorsen H, Lund B, Baumbusch LO, Munthe-Kaas MC (2021)
    The Norwegian childhood cancer biobank
    Cancer Rep (Hoboken), 5 (8), e1555
    DOI 10.1002/cnr2.1555, PubMed 34541832
  7. Zasada M, Madetko-Talowska A, Revhaug C, Rognlien AGW, Baumbusch LO, Książek T, Szewczyk K, Grabowska A, Bik-Multanowski M, Józef Pietrzyk J, Kwinta P, Didrik Saugstad O (2020)
    Transcriptome analysis reveals dysregulation of genes involved in oxidative phosphorylation in a murine model of retinopathy of prematurity
    Pediatr Res, 88 (3), 391-397
    DOI 10.1038/s41390-020-0793-x, PubMed 32053824
  8. Rajar P, Åsegg-Atneosen M, Saugstad OD, Solberg R, Baumbusch LO (2019)
    Quantification of circulating cell-free DNA (cfDNA) in urine using a newborn piglet model of asphyxia
    PLoS One, 14 (12), e0227066
    DOI 10.1371/journal.pone.0227066, PubMed 31891615
  9. Zasada M, Madetko-Talowska A, Revhaug C, Rognlien AGW, Baumbusch LO, Książek T, Szewczyk K, Grabowska A, Bik-Multanowski M, Józef Pietrzyk J, Kwinta P, Saugstad OD (2019)
    Short- and long-term impact of hyperoxia on the blood and retinal cells' transcriptome in a mouse model of oxygen-induced retinopathy
    Pediatr Res, 87 (3), 485-493
    DOI 10.1038/s41390-019-0598-y, PubMed 31578039
  10. Revhaug C, Bik-Multanowski M, Zasada M, Rognlien AGW, Günther CC, Ksiązek T, Madetko-Talowska A, Szewczyk K, Grabowska A, Kwinta P, Pietrzyk JJ, Baumbusch LO, Saugstad OD (2019)
    Immune System Regulation Affected by a Murine Experimental Model of Bronchopulmonary Dysplasia: Genomic and Epigenetic Findings
    Neonatology, 116 (3), 269-277
    DOI 10.1159/000501461, PubMed 31454811
  11. Zasada M, Suski M, Bokiniec R, Szwarc-Duma M, Borszewska-Kornacka MK, Madej J, Bujak-Giżycka B, Madetko-Talowska A, Revhaug C, Baumbusch LO, Saugstad OD, Pietrzyk JJ, Kwinta P (2019)
    Comparative two time-point proteome analysis of the plasma from preterm infants with and without bronchopulmonary dysplasia
    Ital J Pediatr, 45 (1), 112
    DOI 10.1186/s13052-019-0676-0, PubMed 31445514
  12. Manueldas S, Benterud T, Rueegg CS, Garberg HT, Huun MU, Pankratov L, Åsegg-Atneosen M, Solberg R, Escobar J, Saugstad OD, Baumbusch LO (2018)
    Temporal patterns of circulating cell-free DNA (cfDNA) in a newborn piglet model of perinatal asphyxia
    PLoS One, 13 (11), e0206601
    DOI 10.1371/journal.pone.0206601, PubMed 30475817
  13. Revhaug C, Zasada M, Rognlien AGW, Günther CC, Grabowska A, Książek T, Madetko-Talowska A, Szewczyk K, Bik-Multanowski M, Kwinta P, Pietrzyk JJ, Baumbusch LO, Saugstad OD (2019)
    Pulmonary vascular disease is evident in gene regulation of experimental bronchopulmonary dysplasia
    J Matern Fetal Neonatal Med, 33 (12), 2122-2130
    DOI 10.1080/14767058.2018.1541081, PubMed 30428746
  14. Zasada M, Suski M, Bokiniec R, Szwarc-Duma M, Borszewska-Kornacka MK, Madej J, Bujak-Gizycka B, Madetko-Talowska A, Revhaug C, Baumbusch LO, Saugstad OD, Pietrzyk JJ, Kwinta P (2018)
    An iTRAQ-Based Quantitative Proteomic Analysis of Plasma Proteins in Preterm Newborns With Retinopathy of Prematurity
    Invest Ophthalmol Vis Sci, 59 (13), 5312-5319
    DOI 10.1167/iovs.18-24914, PubMed 30398622
  15. Suski M, Bokiniec R, Szwarc-Duma M, Madej J, Bujak-Giżycka B, Borszewska-Kornacka MK, Książek T, Grabowska A, Revhaug C, Baumbusch LO, Saugstad OD, Pietrzyk JJ, Kwinta P (2018)
    Plasma proteome changes in cord blood samples from preterm infants
    J Perinatol, 38 (9), 1182-1189
    DOI 10.1038/s41372-018-0150-7, PubMed 29910464
  16. Suski M, Bokiniec R, Szwarc-Duma M, Madej J, Bujak-Giżycka B, Kwinta P, Borszewska-Kornacka MK, Revhaug C, Baumbusch LO, Saugstad OD, Pietrzyk JJ (2018)
    Prospective plasma proteome changes in preterm infants with different gestational ages
    Pediatr Res, 84 (1), 104-111
    DOI 10.1038/s41390-018-0003-2, PubMed 29795197
  17. Benterud T, Manueldas S, Rivera S, Henckel E, Løberg EM, Norgren S, Baumbusch LO, Solberg R, Saugstad OD (2018)
    Cerebellum Susceptibility to Neonatal Asphyxia: Possible Protective Effects of N-Acetylcysteine Amide
    Dis Markers, 2018, 5046372
    DOI 10.1155/2018/5046372, PubMed 29651324
  18. Kaveh F, Baumbusch LO, Nebdal D, Børresen-Dale AL, Lingjærde OC, Edvardsen H, Kristensen VN, Solvang HK (2018)
    Correction to: A systematic comparison of copy number alterations in four types of female cancer
    BMC Cancer, 18 (1), 80
    DOI 10.1186/s12885-017-3766-7, PubMed 29338700
  19. Kwinta P, Bokiniec R, Bik-Multanowski M, Gunther CC, Grabowska A, Książek T, Madetko-Talowska A, Szewczyk K, Szwarc-Duma M, Borszewska-Kornacka MK, Baumbusch LO, Revhaug C, Saugstad OD, Pietrzyk JJ (2017)
    Comparison of whole genome expression profile between preterm and full-term newborns
    Ginekol Pol, 88 (8), 434-441
    DOI 10.5603/GP.a2017.0080, PubMed 28930370
  20. Polle A, Baumbusch LO, Oschinski C, Eiblmeier M, Kuhlenkamp V, Vollrath B, Scholz F, Rennenberg H (1999)
    Growth and protection against oxidative stress in young clones and mature spruce trees (Picea abies L.) at high altitudes
    Oecologia, 121 (2), 149-156
    DOI 10.1007/s004420050916, PubMed 28308554
  21. Baumbusch LO, Eiblmeier M, Schnitzler JP, Heller W, Sandermann H, Polle A (1998)
    Interactive effects of ozone and low UV-B radiation on antioxidants in spruce (Picea abies) and pine (Pinus sylvestris) needles
    Physiol Plant, 104 (2), 248-254
    DOI 10.1034/j.1399-3054.1998.1040213.x, PubMed 28244603
  22. Demeulemeester J, Kumar P, Møller EK, Nord S, Wedge DC, Peterson A, Mathiesen RR, Fjelldal R, Zamani Esteki M, Theunis K, Fernandez Gallardo E, Grundstad AJ, Borgen E, Baumbusch LO, Børresen-Dale AL, White KP, Kristensen VN, Van Loo P, Voet T, Naume B (2016)
    Tracing the origin of disseminated tumor cells in breast cancer using single-cell sequencing
    Genome Biol, 17 (1), 250
    DOI 10.1186/s13059-016-1109-7, PubMed 27931250
  23. Kaveh F, Baumbusch LO, Nebdal D, Børresen-Dale AL, Lingjærde OC, Edvardsen H, Kristensen VN, Solvang HK (2016)
    A systematic comparison of copy number alterations in four types of female cancer
    BMC Cancer, 16 (1), 913
    DOI 10.1186/s12885-016-2899-4, PubMed 27876019
  24. Garberg HT, Huun MU, Baumbusch LO, Åsegg-Atneosen M, Solberg R, Saugstad OD (2016)
    Temporal Profile of Circulating microRNAs after Global Hypoxia-Ischemia in Newborn Piglets
    Neonatology, 111 (2), 133-139
    DOI 10.1159/000449032, PubMed 27750254
  25. Benterud T, Ystgaard MB, Manueldas S, Pankratov L, Alfaro-Cervello C, Florholmen G, Ahmed MS, Sandvik L, Norgren S, Bjørås M, Baumbusch LO, Solberg R, Saugstad OD (2016)
    N-Acetylcysteine Amide Exerts Possible Neuroprotective Effects in Newborn Pigs after Perinatal Asphyxia
    Neonatology, 111 (1), 12-21
    DOI 10.1159/000447255, PubMed 27497671
  26. Benterud T, Pankratov L, Solberg R, Bolstad N, Skinningsrud A, Baumbusch L, Sandvik L, Saugstad OD (2015)
    Perinatal Asphyxia May Influence the Level of Beta-Amyloid (1-42) in Cerebrospinal Fluid: An Experimental Study on Newborn Pigs
    PLoS One, 10 (10), e0140966
    DOI 10.1371/journal.pone.0140966, PubMed 26501201
  27. Gul KA, Øverland T, Osnes L, Baumbusch LO, Pettersen RD, Lima K, Abrahamsen TG (2015)
    Neonatal Levels of T-cell Receptor Excision Circles (TREC) in Patients with 22q11.2 Deletion Syndrome and Later Disease Features
    J Clin Immunol, 35 (4), 408-15
    DOI 10.1007/s10875-015-0153-5, PubMed 25814142
  28. Reiche K, Kasack K, Schreiber S, Lüders T, Due EU, Naume B, Riis M, Kristensen VN, Horn F, Børresen-Dale AL, Hackermüller J, Baumbusch LO (2014)
    Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes
    PLoS One, 9 (9), e106076
    DOI 10.1371/journal.pone.0106076, PubMed 25264628
  29. Møller EK, Kumar P, Voet T, Peterson A, Van Loo P, Mathiesen RR, Fjelldal R, Grundstad J, Borgen E, Baumbusch LO, Naume B, Børresen-Dale AL, White KP, Nord S, Kristensen VN (2013)
    Next-generation sequencing of disseminated tumor cells
    Front Oncol, 3, 320
    DOI 10.3389/fonc.2013.00320, PubMed 24427740
  30. Liu Y, Zhou R, Baumbusch LO, Tsavachidis S, Brewster AM, Do KA, Sahin A, Hortobagyi GN, Taube JH, Mani SA, Aarøe J, Wärnberg F, Børresen-Dale AL, Mills GB, Thompson PA, Bondy ML (2013)
    Genomic copy number imbalances associated with bone and non-bone metastasis of early-stage breast cancer
    Breast Cancer Res Treat, 143 (1), 189-201
    DOI 10.1007/s10549-013-2796-3, PubMed 24305980
  31. Nilsen G, Liestøl K, Van Loo P, Moen Vollan HK, Eide MB, Rueda OM, Chin SF, Russell R, Baumbusch LO, Caldas C, Børresen-Dale AL, Lingjaerde OC (2012)
    Copynumber: Efficient algorithms for single- and multi-track copy number segmentation
    BMC Genomics, 13, 591
    DOI 10.1186/1471-2164-13-591, PubMed 23442169
  32. Aure MR, Steinfeld I, Baumbusch LO, Liestøl K, Lipson D, Nyberg S, Naume B, Sahlberg KK, Kristensen VN, Børresen-Dale AL, Lingjærde OC, Yakhini Z (2013)
    Identifying in-trans process associated genes in breast cancer by integrated analysis of copy number and expression data
    PLoS One, 8 (1), e53014
    DOI 10.1371/journal.pone.0053014, PubMed 23382830
  33. Baumbusch LO, Helland Å, Wang Y, Liestøl K, Schaner ME, Holm R, Etemadmoghadam D, Alsop K, Brown P, Australian Ovarian Cancer Study Group, Mitchell G, Fereday S, DeFazio A, Bowtell DD, Kristensen GB, Lingjærde OC, Børresen-Dale AL (2013)
    High levels of genomic aberrations in serous ovarian cancers are associated with better survival
    PLoS One, 8 (1), e54356
    DOI 10.1371/journal.pone.0054356, PubMed 23372714
  34. Otto B, Gruner K, Heinlein C, Wegwitz F, Nollau P, Ylstra B, Pantel K, Schumacher U, Baumbusch LO, Martin-Subero JI, Siebert R, Wagener C, Streichert T, Deppert W, Tolstonog GV (2012)
    Low-grade and high-grade mammary carcinomas in WAP-T transgenic mice are independent entities distinguished by Met expression
    Int J Cancer, 132 (6), 1300-10
    DOI 10.1002/ijc.27783, PubMed 22907219
  35. Mathiesen RR, Fjelldal R, Liestøl K, Due EU, Geigl JB, Riethdorf S, Borgen E, Rye IH, Schneider IJ, Obenauf AC, Mauermann O, Nilsen G, Christian Lingjaerde O, Børresen-Dale AL, Pantel K, Speicher MR, Naume B, Baumbusch LO (2011)
    High-resolution analyses of copy number changes in disseminated tumor cells of patients with breast cancer
    Int J Cancer, 131 (4), E405-15
    DOI 10.1002/ijc.26444, PubMed 21935921
  36. Molloy TJ, Bosma AJ, Baumbusch LO, Synnestvedt M, Borgen E, Russnes HG, Schlichting E, van't Veer LJ, Naume B (2011)
    The prognostic significance of tumour cell detection in the peripheral blood versus the bone marrow in 733 early-stage breast cancer patients
    Breast Cancer Res, 13 (3), R61
    DOI 10.1186/bcr2898, PubMed 21672237
  37. Russnes HG, Vollan HKM, Lingjærde OC, Krasnitz A, Lundin P, Naume B, Sørlie T, Borgen E, Rye IH, Langerød A, Chin SF, Teschendorff AE, Stephens PJ, Månér S, Schlichting E, Baumbusch LO, Kåresen R, Stratton MP, Wigler M, Caldas C, Zetterberg A, Hicks J, Børresen-Dale AL (2010)
    Genomic architecture characterizes tumor progression paths and fate in breast cancer patients
    Sci Transl Med, 2 (38), 38ra47
    DOI 10.1126/scitranslmed.3000611, PubMed 20592421
  38. Geigl JB, Obenauf AC, Waldispuehl-Geigl J, Hoffmann EM, Auer M, Hörmann M, Fischer M, Trajanoski Z, Schenk MA, Baumbusch LO, Speicher MR (2009)
    Identification of small gains and losses in single cells after whole genome amplification on tiling oligo arrays
    Nucleic Acids Res, 37 (15), e105
    DOI 10.1093/nar/gkp526, PubMed 19541849
  39. Baumbusch LO, Aarøe J, Johansen FE, Hicks J, Sun H, Bruhn L, Gunderson K, Naume B, Kristensen VN, Liestøl K, Børresen-Dale AL, Lingjaerde OC (2008)
    Comparison of the Agilent, ROMA/NimbleGen and Illumina platforms for classification of copy number alterations in human breast tumors
    BMC Genomics, 9, 379
    DOI 10.1186/1471-2164-9-379, PubMed 18691401
  40. Baumbusch LO, Myhre S, Langerød A, Bergamaschi A, Geisler SB, Lønning PE, Deppert W, Dornreiter I, Børresen-Dale AL (2006)
    Expression of full-length p53 and its isoform Deltap53 in breast carcinomas in relation to mutation status and clinical parameters
    Mol Cancer, 5, 47
    DOI 10.1186/1476-4598-5-47, PubMed 17054774
  41. Lingjaerde OC, Baumbusch LO, Liestøl K, Glad IK, Børresen-Dale AL (2004)
    CGH-Explorer: a program for analysis of array-CGH data
    Bioinformatics, 21 (6), 821-2
    DOI 10.1093/bioinformatics/bti113, PubMed 15531610
  42. Baumbusch LO, Hughes DW, Galau GA, Jakobsen KS (2004)
    LEC1, FUS3, ABI3 and Em expression reveals no correlation with dormancy in Arabidopsis
    J Exp Bot, 55 (394), 77-87
    DOI 10.1093/jxb/erh014, PubMed 14676287
  43. Baumbusch LO, Thorstensen T, Krauss V, Fischer A, Naumann K, Assalkhou R, Schulz I, Reuter G, Aalen RB (2001)
    The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes
    Nucleic Acids Res, 29 (21), 4319-33
    DOI 10.1093/nar/29.21.4319, PubMed 11691919
  44. Baumbusch LO, Sundal IK, Hughes DW, Galau GA, Jakobsen KS (2001)
    Efficient protocols for CAPS-based mapping in Arabidopsis
    Plant Mol. Biol. Rep., 19 (2), 137-149
    DOI 10.1007/BF02772156

 
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