Publications from OUS - Cancer Informatics (Johannessen)

25 publications found

Publications 2024

1. Bogaard M, Strømme JM, Kidd SG, Johannessen B, Bakken AC, Lothe RA, Axcrona K, Skotheim RI, Axcrona U (2024)
   GRIN3A: A biomarker associated with a cribriform pattern and poor prognosis in prostate cancer
   Neoplasia, 55, 101023
   DOI 10.1016/j.neo.2024.101023, PubMed 38944914
2. Sveen A, Johannessen B, Klokkerud SM, Kraggerud SM, Meza-Zepeda LA, Bjørnslett M, Bischof K, Myklebost O, Taskén K, Skotheim RI, Dørum A, Davidson B, Lothe RA (2024)
   Evolutionary mode and timing of dissemination of high-grade serous carcinomas
   JCI Insight, 9 (3)
   DOI 10.1172/jci.insight.170423, PubMed 38175731

Publications 2023

1. Meier Strømme J, Johannessen B, Skotheim RI (2023)
   Deviating Alternative Splicing as a Molecular Subtype of Microsatellite Stable Colorectal Cancer
   JCO Clin Cancer Inform, 7, e2200159
   DOI 10.1200/CCI.22.00159, PubMed 36821799

Publications 2022

1. Carm KT, Johannessen B, Bogaard M, Bakken AC, Maltau AV, Hoff AM, Axcrona U, Axcrona K, Lothe RA, Skotheim RI (2022)
   Somatic mutations reveal complex metastatic seeding from multifocal primary prostate cancer
   Int J Cancer, 152 (5), 945-951
   DOI 10.1002/ijc.34226, PubMed 35880692
2. Fontugne J, Cai PY, Alnajar H, Bhinder B, Park K, Ye H, Beg S, Sailer V, Siddiqui J, Blattner-Johnson M, Croyle JA, Noorzad Z, Calagua C, MacDonald TY, Axcrona U, Bogaard M, Axcrona K, Scherr DS, Sanda MG, Johannessen B, Chinnaiyan AM, Elemento O, Skotheim RI, Rubin MA, Barbieri CE et al. (2022)
   Collision tumors revealed by prospectively assessing subtype-defining molecular alterations in 904 individual prostate cancer foci
   JCI Insight, 7 (4)
   DOI 10.1172/jci.insight.155309, PubMed 35050902
3. Strømme JM, Johannessen B, Kidd SG, Bogaard M, Carm KT, Zhang X, Sveen A, Mathelier A, Lothe RA, Axcrona U, Axcrona K, Skotheim RI (2022)
   Expressed prognostic biomarkers for primary prostate cancer independent of multifocality and transcriptome heterogeneity
   Cancer Gene Ther, 29 (8-9), 1276-1284
   DOI 10.1038/s41417-022-00444-7, PubMed 35194199
4. Wolowczyk C, Neckmann U, Aure MR, Hall M, Johannessen B, Zhao S, Skotheim RI, Andersen SB, Zwiggelaar R, Steigedal TS, Lingjærde OC, Sahlberg KK, Almaas E, Bjørkøy G (2022)
   NRF2 drives an oxidative stress response predictive of breast cancer
   Free Radic Biol Med, 184, 170-184
   DOI 10.1016/j.freeradbiomed.2022.03.029, PubMed 35381325

Publications 2021

1. Sveen A, Johannessen B, Eilertsen IA, Røsok BI, Gulla M, Eide PW, Bruun J, Kryeziu K, Meza-Zepeda LA, Myklebost O, Bjørnbeth BA, Skotheim RI, Nesbakken A, Lothe RA (2021)
   The expressed mutational landscape of microsatellite stable colorectal cancers
   Genome Med, 13 (1), 142
   DOI 10.1186/s13073-021-00955-2, PubMed 34470667

Publications 2020

1. Hoff AM, Kraggerud SM, Alagaratnam S, Berg KCG, Johannessen B, Høland M, Nilsen G, Lingjærde OC, Andrews PW, Lothe RA, Skotheim RI (2020)
   Frequent copy number gains of SLC2A3 and ETV1 in testicular embryonal carcinomas
   Endocr Relat Cancer, 27 (9), 457-468
   DOI 10.1530/ERC-20-0064, PubMed 32580154
2. Smeby J, Kryeziu K, Berg KCG, Eilertsen IA, Eide PW, Johannessen B, Guren MG, Nesbakken A, Bruun J, Lothe RA, Sveen A (2020)
   Molecular correlates of sensitivity to PARP inhibition beyond homologous recombination deficiency in pre-clinical models of colorectal cancer point to wild-type TP53 activity
   EBioMedicine, 59, 102923
   DOI 10.1016/j.ebiom.2020.102923, PubMed 32799124
3. Wise JF, Nakken S, Steen CB, Vodák D, Trøen G, Johannessen B, Lingjærde OC, Hilden V, Blaker YN, Bai B, Aasheim LB, Pasanen A, Lorenz S, Sveen A, Lothe RA, Myklebost O, Leppä S, Meza-Zepeda LA, Beiske K, Lawrence MS, Hovig E, Myklebust JH, Smeland EB, Holte H (2020)
   Mutational dynamics and immune evasion in diffuse large B-cell lymphoma explored in a relapse-enriched patient series
   Blood Adv, 4 (9), 1859-1866
   DOI 10.1182/bloodadvances.2019001325, PubMed 32374878

Publications 2019

1. Brunsell TH, Sveen A, Bjørnbeth BA, Røsok BI, Danielsen SA, Brudvik KW, Berg KCG, Johannessen B, Cengija V, Abildgaard A, Guren MG, Nesbakken A, Lothe RA (2019)
   High Concordance and Negative Prognostic Impact of RAS/BRAF/PIK3CA Mutations in Multiple Resected Colorectal Liver Metastases
   Clin Colorectal Cancer, 19 (1), e26-e47
   DOI 10.1016/j.clcc.2019.09.003, PubMed 31982351
2. Eilertsen IA, Moosavi SH, Strømme JM, Nesbakken A, Johannessen B, Lothe RA, Sveen A (2019)
   Technical differences between sequencing and microarray platforms impact transcriptomic subtyping of colorectal cancer
   Cancer Lett, 469, 246-255
   DOI 10.1016/j.canlet.2019.10.040, PubMed 31678167
3. Neckmann U, Wolowczyk C, Hall M, Almaas E, Ren J, Zhao S, Johannessen B, Skotheim RI, Bjørkøy G, Ten Dijke P, Holien T (2019)
   GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients
   Cell Commun Signal, 17 (1), 140
   DOI 10.1186/s12964-019-0467-7, PubMed 31694641
4. Smeby J, Sveen A, Eilertsen IA, Danielsen SA, Hoff AM, Eide PW, Johannessen B, Hektoen M, Skotheim RI, Guren MG, Nesbakken A, Lothe RA (2019)
   Transcriptional and functional consequences of TP53 splice mutations in colorectal cancer
   Oncogenesis, 8 (6), 35
   DOI 10.1038/s41389-019-0141-3, PubMed 31092812

Publications 2018

1. Løvf M, Zhao S, Axcrona U, Johannessen B, Bakken AC, Carm KT, Hoff AM, Myklebost O, Meza-Zepeda LA, Lie AK, Axcrona K, Lothe RA, Skotheim RI (2018)
   Multifocal Primary Prostate Cancer Exhibits High Degree of Genomic Heterogeneity
   Eur Urol, 75 (3), 498-505
   DOI 10.1016/j.eururo.2018.08.009, PubMed 30181068

Publications 2017

1. Berg KCG, Eide PW, Eilertsen IA, Johannessen B, Bruun J, Danielsen SA, Bjørnslett M, Meza-Zepeda LA, Eknæs M, Lind GE, Myklebost O, Skotheim RI, Sveen A, Lothe RA (2017)
   Multi-omics of 34 colorectal cancer cell lines - a resource for biomedical studies
   Mol Cancer, 16 (1), 116
   DOI 10.1186/s12943-017-0691-y, PubMed 28683746
2. Lågstad S, Zhao S, Hoff AM, Johannessen B, Lingjærde OC, Skotheim RI (2017)
   chimeraviz: a tool for visualizing chimeric RNA
   Bioinformatics, 33 (18), 2954-2956
   DOI 10.1093/bioinformatics/btx329, PubMed 28525538
3. Smebye ML, Agostini A, Johannessen B, Thorsen J, Davidson B, Tropé CG, Heim S, Skotheim RI, Micci F (2017)
   Involvement of DPP9 in gene fusions in serous ovarian carcinoma
   BMC Cancer, 17 (1), 642
   DOI 10.1186/s12885-017-3625-6, PubMed 28893231
4. Sveen A, Johannessen B, Tengs T, Danielsen SA, Eilertsen IA, Lind GE, Berg KCG, Leithe E, Meza-Zepeda LA, Domingo E, Myklebost O, Kerr D, Tomlinson I, Nesbakken A, Skotheim RI, Lothe RA (2017)
   Multilevel genomics of colorectal cancers with microsatellite instability-clinical impact of JAK1 mutations and consensus molecular subtype 1
   Genome Med, 9 (1), 46
   DOI 10.1186/s13073-017-0434-0, PubMed 28539123

Publications 2015

1. Brabrand S, Johannessen B, Axcrona U, Kraggerud SM, Berg KG, Bakken AC, Bruun J, Fosså SD, Lothe RA, Lehne G, Skotheim RI (2015)
   Exome sequencing of bilateral testicular germ cell tumors suggests independent development lineages
   Neoplasia, 17 (2), 167-74
   DOI 10.1016/j.neo.2014.12.005, PubMed 25748235
2. Hoff AM, Johannessen B, Alagaratnam S, Zhao S, Nome T, Løvf M, Bakken AC, Hektoen M, Sveen A, Lothe RA, Skotheim RI (2015)
   Novel RNA variants in colorectal cancers
   Oncotarget, 6 (34), 36587-602
   DOI 10.18632/oncotarget.5500, PubMed 26474385
3. Johannessen B, Sveen A, Skotheim RI (2015)
   TIN: An R Package for Transcriptome Instability Analysis
   Cancer Inform, 14, 109-12
   DOI 10.4137/CIN.S31363, PubMed 26448683
4. Munkley J, Oltean S, Vodák D, Wilson BT, Livermore KE, Zhou Y, Star E, Floros VI, Johannessen B, Knight B, McCullagh P, McGrath J, Crundwell M, Skotheim RI, Robson CN, Leung HY, Harries LW, Rajan P, Mills IG, Elliott DJ (2015)
   The androgen receptor controls expression of the cancer-associated sTn antigen and cell adhesion through induction of ST6GalNAc1 in prostate cancer
   Oncotarget, 6 (33), 34358-74
   DOI 10.18632/oncotarget.6024, PubMed 26452038

Publications 2014

1. Sveen A, Johannessen B, Teixeira MR, Lothe RA, Skotheim RI (2014)
   Transcriptome instability as a molecular pan-cancer characteristic of carcinomas
   BMC Genomics, 15 (1), 672
   DOI 10.1186/1471-2164-15-672, PubMed 25109687