Francesco Ballesio

  • Researcher; PhD
 

Publications 2025

Ballesio F, Teofani A, Carrino C, Catalano M, Nicolaeasa ML, Ausiello G, Helmer-Citterich M, Gherardini PF (2025)
BEAGLE 2.0: A Web Server for RNA Secondary Structure Similarity Detection Leveraging SHAPE-directed RNA Structure Determination
J Mol Biol, 437 (15), 169154
DOI 10.1016/j.jmb.2025.169154, PubMed 40268235

Publications 2024

Ballesio F, Pepe G, Ausiello G, Novelletto A, Helmer-Citterich M, Gherardini PF (2024)
Human lncRNAs harbor conserved modules embedded in different sequence contexts
Noncoding RNA Res, 9 (4), 1257-1270
DOI 10.1016/j.ncrna.2024.06.013, PubMed 39040814

Publications 2022

Pepe G, Appierdo R, Carrino C, Ballesio F, Helmer-Citterich M, Gherardini PF (2022)
Artificial intelligence methods enhance the discovery of RNA interactions
Front Mol Biosci, 9, 1000205
DOI 10.3389/fmolb.2022.1000205, PubMed 36275611

Pepe G, Guarracino A, Ballesio F, Parca L, Ausiello G, Helmer-Citterich M (2022)
Evaluation of potential miRNA sponge effects of SARS genomes in human
Noncoding RNA Res, 7 (1), 48-53
DOI 10.1016/j.ncrna.2022.01.003, PubMed 35075440

Publications 2021

Guarracino A, Pepe G, Ballesio F, Adinolfi M, Pietrosanto M, Sangiovanni E, Vitale I, Ausiello G, Helmer-Citterich M (2021)
BRIO: a web server for RNA sequence and structure motif scan
Nucleic Acids Res, 49 (W1), W67-W71
DOI 10.1093/nar/gkab400, PubMed 34038531

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