Xiangning Bai
- Research scientist; PhD
Publications 2024
Pulmonary comorbidities in people with HIV- the microbiome connection
Curr Opin HIV AIDS, 19 (5), 246-252
DOI 10.1097/COH.0000000000000871, PubMed 38935049
Elite controllers microbiome: unraveling the mystery of association and causation
Curr Opin HIV AIDS, 19 (5), 261-267
DOI 10.1097/COH.0000000000000867, PubMed 38874425
Prevalence and Characteristics of Plasmid-Encoded Serine Protease EspP in Clinical Shiga Toxin-Producing Escherichia coli Strains from Patients in Sweden
Microorganisms, 12 (3)
DOI 10.3390/microorganisms12030589, PubMed 38543640
Characterization of Escherichia coli strains producing Shiga Toxin 2f subtype from domestic Pigeon
Sci Rep, 14 (1), 24481
DOI 10.1038/s41598-024-76523-6, PubMed 39424949
Genetic diversity and potential transmission of Escherichia albertii in a poultry breeding rural village
Jpn J Infect Dis (in press)
DOI 10.7883/yoken.JJID.2024.209, PubMed 39343555
Publications 2023
Interpretable Machine-Learning and Big Data Mining to Predict Gas Diffusivity in Metal-Organic Frameworks
Adv Sci (Weinh), 10 (21), e2301461
DOI 10.1002/advs.202301461, PubMed 37166040
Escherichia albertii isolated from the bloodstream of a patient with liver cirrhosis in China: A case report
Heliyon, 9 (11), e22298
DOI 10.1016/j.heliyon.2023.e22298, PubMed 38058622
Genetic Diversity and Expression of Intimin in Escherichia albertii Isolated from Humans, Animals, and Food
Microorganisms, 11 (12)
DOI 10.3390/microorganisms11122843, PubMed 38137987
Genome-wide association study of hemolytic uremic syndrome causing Shiga toxin-producing Escherichia coli from Sweden, 1994-2018
Eur J Clin Microbiol Infect Dis, 42 (6), 771-779
DOI 10.1007/s10096-023-04600-1, PubMed 37103716
Species-Level Taxonomic Characterization of Uncultured Core Gut Microbiota of Plateau Pika
Microbiol Spectr, 11 (3), e0349522
DOI 10.1128/spectrum.03495-22, PubMed 37067438
Characteristics of Shiga Toxin-Producing Escherichia coli Circulating in Asymptomatic Food Handlers
Toxins (Basel), 15 (11)
DOI 10.3390/toxins15110640, PubMed 37999503
Genetic Characterization of Intimin Gene (eae) in Clinical Shiga Toxin-Producing Escherichia coli Strains from Pediatric Patients in Finland
Toxins (Basel), 15 (12)
DOI 10.3390/toxins15120669, PubMed 38133173
Characterization of the novel temperate Escherichia coli phage phiStx2k
Arch Virol, 169 (1), 5
DOI 10.1007/s00705-023-05941-0, PubMed 38078984
Publications 2022
Characterization of the Upper Respiratory Bacterial Microbiome in Critically Ill COVID-19 Patients
Biomedicines, 10 (5)
DOI 10.3390/biomedicines10050982, PubMed 35625719
Comparative Genomics of Shiga Toxin-Producing Escherichia coli Strains Isolated from Pediatric Patients with and without Hemolytic Uremic Syndrome from 2000 to 2016 in Finland
Microbiol Spectr, 10 (4), e0066022
DOI 10.1128/spectrum.00660-22, PubMed 35730965
High prevalence and pathogenic potential of Shiga toxin-producing Escherichia coli strains in raw mutton and beef in Shandong, China
Curr Res Food Sci, 5, 1596-1602
DOI 10.1016/j.crfs.2022.08.021, PubMed 36161222
Identification and Genomic Characterization of Escherichia albertii in Migratory Birds from Poyang Lake, China
Pathogens, 12 (1)
DOI 10.3390/pathogens12010009, PubMed 36678357
Description of Corynebacterium poyangense sp. nov., isolated from the feces of the greater white-fronted geese (Anser albifrons)
J Microbiol, 60 (7), 668-677
DOI 10.1007/s12275-022-2089-9, PubMed 35614376
Erratum: Nanchangia anserum gen. nov., sp. nov., isolated from feces of greater white-fronted geese (Anser albifrons) in Poyang Lake, China
Int J Syst Evol Microbiol, 72 (3)
DOI 10.1099/ijsem.0.005301, PubMed 35316176
High Prevalence and Persistence of Escherichia coli Strains Producing Shiga Toxin Subtype 2k in Goat Herds
Microbiol Spectr, 10 (4), e0157122
DOI 10.1128/spectrum.01571-22, PubMed 35938860
Genomic Characterization of Escherichia coli O8 Strains Producing Shiga Toxin 2l Subtype
Microorganisms, 10 (6)
DOI 10.3390/microorganisms10061245, PubMed 35744763
Publications 2021
Whole-Genome Metagenomic Analysis of the Gut Microbiome in HIV-1-Infected Individuals on Antiretroviral Therapy
Front Microbiol, 12, 667718
DOI 10.3389/fmicb.2021.667718, PubMed 34248876
Characterization of Clinical Escherichia coli Strains Producing a Novel Shiga Toxin 2 Subtype in Sweden and Denmark
Microorganisms, 9 (11)
DOI 10.3390/microorganisms9112374, PubMed 34835499
Genomic Insights Into Clinical Shiga Toxin-Producing Escherichia coli Strains: A 15-Year Period Survey in Jönköping, Sweden
Front Microbiol, 12, 627861
DOI 10.3389/fmicb.2021.627861, PubMed 33613494
Whole-genome characterization of hemolytic uremic syndrome-causing Shiga toxin-producing Escherichia coli in Sweden
Virulence, 12 (1), 1296-1305
DOI 10.1080/21505594.2021.1922010, PubMed 33939581
Molecular Characterization of the Enterohemolysin Gene (ehxA) in Clinical Shiga Toxin-Producing Escherichia coli Isolates
Toxins (Basel), 13 (1)
DOI 10.3390/toxins13010071, PubMed 33477906
Corynebacterium anserum sp. nov., isolated from the faeces of greater white-fronted geese (Anser albifrons) at Poyang Lake, PR China
Int J Syst Evol Microbiol, 71 (2)
DOI 10.1099/ijsem.0.004637, PubMed 33427608
Nanchangia anserum gen. nov., sp. nov., isolated from feces of greater white-fronted geese (Anser albifrons)
Int J Syst Evol Microbiol, 71 (8)
DOI 10.1099/ijsem.0.004978, PubMed 34431769
Antimicrobial Resistance of Non-O157 Shiga Toxin-Producing Escherichia coli Isolated from Humans and Domestic Animals
Antibiotics (Basel), 10 (1)
DOI 10.3390/antibiotics10010074, PubMed 33466678
Genomic Characteristics of Stx2e-Producing Escherichia coli Strains Derived from Humans, Animals, and Meats
Pathogens, 10 (12)
DOI 10.3390/pathogens10121551, PubMed 34959506
Publications 2020
Molecular characteristics of eae-positive clinical Shiga toxin-producing Escherichia coli in Sweden
Emerg Microbes Infect, 9 (1), 2562-2570
DOI 10.1080/22221751.2020.1850182, PubMed 33179570
Species-Level Analysis of Human Gut Microbiota With Metataxonomics
Front Microbiol, 11, 2029
DOI 10.3389/fmicb.2020.02029, PubMed 32983030
Genetic diversity of the intimin gene (eae) in non-O157 Shiga toxin-producing Escherichia coli strains in China
Sci Rep, 10 (1), 3275
DOI 10.1038/s41598-020-60225-w, PubMed 32094410
Hemolytic uremic syndrome caused by Shiga toxin-producing Escherichia coli in children: incidence, risk factors, and clinical outcome
Pediatr Nephrol, 35 (9), 1749-1759
DOI 10.1007/s00467-020-04560-0, PubMed 32323005
Publications 2019
Molecular Characterization and Comparative Genomics of Clinical Hybrid Shiga Toxin-Producing and Enterotoxigenic Escherichia coli (STEC/ETEC) Strains in Sweden
Sci Rep, 9 (1), 5619
DOI 10.1038/s41598-019-42122-z, PubMed 30948755
High prevalence of non-O157 Shiga toxin-producing Escherichia coli in beef cattle detected by combining four selective agars
BMC Microbiol, 19 (1), 213
DOI 10.1186/s12866-019-1582-8, PubMed 31488047
Structural and Functional Characterization of Stx2k, a New Subtype of Shiga Toxin 2
Microorganisms, 8 (1)
DOI 10.3390/microorganisms8010004, PubMed 31861375
Escherichia coli strains producing a novel Shiga toxin 2 subtype circulate in China
Int J Med Microbiol, 310 (1), 151377
DOI 10.1016/j.ijmm.2019.151377, PubMed 31757694
Neisseria weixii sp. nov., isolated from rectal contents of Tibetan Plateau pika (Ochotona curzoniae)
Int J Syst Evol Microbiol, 69 (8), 2305-2311
DOI 10.1099/ijsem.0.003466, PubMed 31162020
Neisseria chenwenguii sp. nov. isolated from the rectal contents of a plateau pika (Ochotona curzoniae)
Antonie Van Leeuwenhoek, 112 (7), 1001-1010
DOI 10.1007/s10482-019-01234-2, PubMed 30798492
Publications 2018
Identification and pathogenomic analysis of an Escherichia coli strain producing a novel Shiga toxin 2 subtype
Sci Rep, 8 (1), 6756
DOI 10.1038/s41598-018-25233-x, PubMed 29712985
Precise Fecal Microbiome of the Herbivorous Tibetan Antelope Inhabiting High-Altitude Alpine Plateau
Front Microbiol, 9, 2321
DOI 10.3389/fmicb.2018.02321, PubMed 30323800
Shiga Toxin-Producing Escherichia coli Infection in Jönköping County, Sweden: Occurrence and Molecular Characteristics in Correlation With Clinical Symptoms and Duration of stx Shedding
Front Cell Infect Microbiol, 8, 125
DOI 10.3389/fcimb.2018.00125, PubMed 29765909
USA300 methicillin-resistant Staphylococcus aureus in Stockholm, Sweden, from 2008 to 2016
PLoS One, 13 (11), e0205761
DOI 10.1371/journal.pone.0205761, PubMed 30403684
Genetic diversity of the enterohaemolysin gene (ehxA) in non-O157 Shiga toxin-producing Escherichia coli strains in China
Sci Rep, 8 (1), 4233
DOI 10.1038/s41598-018-22699-7, PubMed 29523817
Multidrug-Resistant Escherichia albertii: Co-occurrence of β-Lactamase and MCR-1 Encoding Genes
Front Microbiol, 9, 258
DOI 10.3389/fmicb.2018.00258, PubMed 29503643
Occurrence of multidrug-resistant and ESBL-producing atypical enteropathogenic Escherichia coli in China
Gut Pathog, 10, 8
DOI 10.1186/s13099-018-0234-0, PubMed 30038667
Publications 2017
Tellurite resistance profiles and performance of different chromogenic agars for detection of non-O157 Shiga toxin-producing Escherichia coli
Int J Food Microbiol, 266, 295-300
DOI 10.1016/j.ijfoodmicro.2017.12.016, PubMed 29274486
Actinomyces vulturis sp. nov., isolated from Gyps himalayensis
Int J Syst Evol Microbiol, 67 (6), 1720-1726
DOI 10.1099/ijsem.0.001851, PubMed 28629509
Corrigendum: Actinomyces vulturis sp. nov., isolated from Gyps himalayensis
Int J Syst Evol Microbiol, 67 (8), 3134
DOI 10.1099/ijsem.0.002235, PubMed 28853688
Metataxonomics reveal vultures as a reservoir for Clostridium perfringens
Emerg Microbes Infect, 6 (2), e9
DOI 10.1038/emi.2016.137, PubMed 28223683
An outbreak of shigellosis in a Children Welfare Institute caused by a multiple-antibiotic-resistant strain of Shigella flexneri 2a
J Infect Public Health, 10 (6), 814-818
DOI 10.1016/j.jiph.2017.01.003, PubMed 28189512
High Prevalence of Virulence Genes in Specific Genotypes of Atypical Enteropathogenic Escherichia coli
Front Cell Infect Microbiol, 7, 109
DOI 10.3389/fcimb.2017.00109, PubMed 28421169
Publications 2016
Molecular and Phylogenetic Characterization of Non-O157 Shiga Toxin-Producing Escherichia coli Strains in China
Front Cell Infect Microbiol, 6, 143
DOI 10.3389/fcimb.2016.00143, PubMed 27853704
Streptococcuspantholopis sp. nov., isolated from faeces of the Tibetan antelope (Pantholops hodgsonii)
Int J Syst Evol Microbiol, 66 (9), 3281-3286
DOI 10.1099/ijsem.0.001189, PubMed 27226124
Shiga Toxin-Producing Escherichia coli in Plateau Pika (Ochotona curzoniae) on the Qinghai-Tibetan Plateau, China
Front Microbiol, 7, 375
DOI 10.3389/fmicb.2016.00375, PubMed 27047483
Insights into the evolution of pathogenicity of Escherichia coli from genomic analysis of intestinal E. coli of Marmota himalayana in Qinghai-Tibet plateau of China
Emerg Microbes Infect, 5 (12), e122
DOI 10.1038/emi.2016.122, PubMed 27924811
Streptococcus halotolerans sp. nov. isolated from the respiratory tract of Marmota himalayana in Qinghai-Tibet Plateau of China
Int J Syst Evol Microbiol, 66 (10), 4211-4217
DOI 10.1099/ijsem.0.001337, PubMed 27469933
Streptococcusmarmotae sp. nov., isolated from the respiratory tract of Marmota himalayana
Int J Syst Evol Microbiol, 66 (11), 4315-4322
DOI 10.1099/ijsem.0.001350, PubMed 27473166
Genetic Diversity of Intimin Gene of Atypical Enteropathogenic Escherichia coli Isolated from Human, Animals and Raw Meats in China
PLoS One, 11 (3), e0152571
DOI 10.1371/journal.pone.0152571, PubMed 27031337
Publications 2015
Prevalence and characteristics of Shiga toxin-producing Escherichia coli isolated from retail raw meats in China
Int J Food Microbiol, 200, 31-8
DOI 10.1016/j.ijfoodmicro.2015.01.018, PubMed 25676240
Helicobacter himalayensis sp. nov. isolated from gastric mucosa of Marmota himalayana
Int J Syst Evol Microbiol, 65 (Pt 6), 1719-1725
DOI 10.1099/ijs.0.000163, PubMed 25736414
[Multilocus sequence typing analysis of enteropathogenic escherichia coli isolates in 8 provinces of China, 2006-2014]
Zhonghua Yu Fang Yi Xue Za Zhi, 49 (4), 339-43
PubMed 26081543
Publications 2014
Characterization of Shiga toxin-producing Escherichia coli isolated from healthy pigs in China
BMC Microbiol, 14, 5
DOI 10.1186/1471-2180-14-5, PubMed 24393167
Publications 2013
Shiga toxin-producing Escherichia coli in yaks (Bos grunniens) from the Qinghai-Tibetan Plateau, China
PLoS One, 8 (6), e65537
DOI 10.1371/journal.pone.0065537, PubMed 23776496
SNP genotyping of enterohemorrhagic Escherichia coli O157:H7 isolates from China and genomic identity of the 1999 Xuzhou outbreak
Infect Genet Evol, 16, 275-81
DOI 10.1016/j.meegid.2013.02.018, PubMed 23499772
Global transcriptional and phenotypic analyses of Escherichia coli O157:H7 strain Xuzhou21 and its pO157_Sal cured mutant
PLoS One, 8 (5), e65466
DOI 10.1371/journal.pone.0065466, PubMed 23738017