Publications 2024

Akdeniz BC, Frei O, Hagen E, Filiz TT, Karthikeyan S, Pasman J, Jangmo A, Bergstedt J, Shorter JR, Zetterberg R, Meijsen J, Sønderby IE, Buil A, Tesli M, Lu Y, Sullivan P, Andreassen OA, Hovig E (2024)
COSGAP: COntainerized Statistical Genetics Analysis Pipelines
Bioinform Adv, 4 (1), vbae067
DOI 10.1093/bioadv/vbae067, PubMed 38808072

Akdeniz BC, Frei O, Shadrin A, Vetrov D, Kropotov D, Hovig E, Andreassen OA, Dale AM (2024)
Finemap-MiXeR: A variational Bayesian approach for genetic finemapping
PLoS Genet, 20 (8), e1011372
DOI 10.1371/journal.pgen.1011372, PubMed 39146375

Akdeniz BC, Morris AH, Møller P, Andreassen O, Hovig E, Dominguez-Valentin M (2024)
Evaluation of a combined model of Polygenic Risk Score and mismatch repair genes in the association of colorectal cancer for Norwegian cohort
Tumori, 3008916241303648 (in press)
DOI 10.1177/03008916241303648, PubMed 39654342

Frei O, Hindley G, Shadrin AA, van der Meer D, Akdeniz BC, Hagen E, Cheng W, O'Connell KS, Bahrami S, Parker N, Smeland OB, Holland D, Schizophrenia Working Group of the Psychiatric Genomics Consortium, de Leeuw C, Posthuma D, Andreassen OA, Dale AM (2024)
Improved functional mapping of complex trait heritability with GSA-MiXeR implicates biologically specific gene sets
Nat Genet, 56 (6), 1310-1318
DOI 10.1038/s41588-024-01771-1, PubMed 38831010

Publications 2023

Akdeniz BC, Mattingsdal M, Dominguez-Valentin M, Frei O, Shadrin A, Puustusmaa M, Saar R, Sõber S, Møller P, Andreassen OA, Padrik P, Hovig E (2023)
A Breast Cancer Polygenic Risk Score Is Feasible for Risk Stratification in the Norwegian Population
Cancers (Basel), 15 (16)
DOI 10.3390/cancers15164124, PubMed 37627152

Publications 2021

Akdeniz BC, Egan M (2021)
Molecular Communication for Equilibrium State Estimation in Biochemical Processes on a Lab-on-a-Chip
IEEE Trans Nanobioscience, 20 (2), 193-201
DOI 10.1109/TNB.2021.3062473, PubMed 33635792

Akdeniz BC, Egan M, Tang BQ (2021)
Equilibrium Signaling: Molecular Communication Robust to Geometry Uncertainties
IEEE Trans. Commun., 69 (2), 752-765
DOI 10.1109/TCOMM.2020.3034662

Egan M, Akdeniz BC, Tang BQ (2021)
Equilibrium Signaling in Spatially Inhomogeneous Diffusion and External Forces
IEEE T. Mol. Biol. Multi-Scale Commun., 7 (2), 106-110
DOI 10.1109/TMBMC.2021.3054908

Oncu AE, Ozdemir HU, Orhan HI, Akdeniz BCC, Toprakci A, Aslihak MA, Yilmaz HB, Pusane AE, Tugcu T, Dinc F (2021)
Analytical Investigation of Long-Time Diffusion Dynamics in a Synaptic Channel With Glial Cells
IEEE Commun. Lett., 25 (11), 3444-3448
DOI 10.1109/LCOMM.2021.3105613

Publications 2019

Dinc F, Akdeniz BC, Pusane AE, Tugcu T (2019)
A General Analytical Approximation to Impulse Response of 3-D Microfluidic Channels in Molecular Communication
IEEE Trans Nanobioscience, 18 (3), 396-403
DOI 10.1109/TNB.2019.2905417, PubMed 30892220