Gustavo Antonio De Souza

 

Author network for Gustavo Antonio De Souza by COREMINE medical


Publications 2018

Kostas M, Haugsten EM, Zhen Y, Sørensen V, Szybowska P, Fiorito E, Lorenz S, Jones N, de Souza GA, Wiedlocha A, Wesche J (2018)
Protein Tyrosine Phosphatase Receptor Type G (PTPRG) Controls Fibroblast Growth Factor Receptor (FGFR) 1 Activity and Influences Sensitivity to FGFR Kinase Inhibitors
Mol Cell Proteomics, 17 (5), 850-870
DOI 10.1074/mcp.RA117.000538, PubMed 29371290

Shao W, Pedrioli PGA, Wolski W, Scurtescu C, Schmid E, Vizcaíno JA, Courcelles M, Schuster H, Kowalewski D, Marino F, Arlehamn CSL, Vaughan K, Peters B, Sette A, Ottenhoff THM, Meijgaarden KE, Nieuwenhuizen N, Kaufmann SHE, Schlapbach R, Castle JC, Nesvizhskii AI, Nielsen M, Deutsch EW, Campbell DS, Moritz RL et al. (2018)
The SysteMHC Atlas project
Nucleic Acids Res, 46 (D1), D1237-D1247
DOI 10.1093/nar/gkx664, PubMed 28985418

Sikorski K, Mehta A, Inngjerdingen M, Thakor F, Kling S, Kalina T, Nyman TA, Stensland ME, Zhou W, de Souza GA, Holden L, Stuchly J, Templin M, Lund-Johansen F (2018)
A high-throughput pipeline for validation of antibodies
Nat Methods, 15 (11), 909-912
DOI 10.1038/s41592-018-0179-8, PubMed 30377371

Tutturen AEV, Dørum S, Clancy T, Reims HM, Christophersen A, Lundin KEA, Sollid LM, de Souza GA, Stamnaes J (2018)
Characterization of the Small Intestinal Lesion in Celiac Disease by Label-Free Quantitative Mass Spectrometry
Am J Pathol, 188 (7), 1563-1579
DOI 10.1016/j.ajpath.2018.03.017, PubMed 29684362

Publications 2017

da Silva VL, Fonseca AF, Fonseca M, da Silva TE, Coelho AC, Kroll JE, de Souza JES, Stransky B, de Souza GA, de Souza SJ (2017)
Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis
Oncotarget, 8 (54), 92966-92977
DOI 10.18632/oncotarget.21715, PubMed 29190970

Gravina F, Sanchuki HS, Rodrigues TE, Gerhardt ECM, Pedrosa FO, Souza EM, Valdameri G, de Souza GA, Huergo LF (2017)
Proteome analysis of an Escherichia coli ptsN-null strain under different nitrogen regimes
J Proteomics, 174, 28-35
DOI 10.1016/j.jprot.2017.12.006, PubMed 29274402

Hassel B, De Souza GA, Stensland ME, Ivanovic J, Voie Ø, Dahlberg D (2017)
The proteome of pus from human brain abscesses: host-derived neurotoxic proteins and the cell-type diversity of CNS pus
J Neurosurg, 129 (3), 829-837
DOI 10.3171/2017.4.JNS17284, PubMed 29053067

Iversen R, Snir O, Stensland M, Kroll JE, Steinsbø Ø, Korponay-Szabó IR, Lundin KEA, de Souza GA, Sollid LM (2017)
Strong Clonal Relatedness between Serum and Gut IgA despite Different Plasma Cell Origins
Cell Rep, 20 (10), 2357-2367
DOI 10.1016/j.celrep.2017.08.036, PubMed 28877470

Kroll JE, da Silva VL, de Souza SJ, de Souza GA (2017)
A tool for integrating genetic and mass spectrometry-based peptide data: Proteogenomics Viewer: PV: A genome browser-like tool, which includes MS data visualization and peptide identification parameters
Bioessays, 39 (7)
DOI 10.1002/bies.201700015, PubMed 28582591

Lubelwana Hafver T, Wanichawan P, Manfra O, de Souza GA, Lunde M, Martinsen M, Louch WE, Sejersted OM, Carlson CR (2017)
Mapping the in vitro interactome of cardiac sodium (Na+ )-calcium (Ca2+ ) exchanger 1 (NCX1)
Proteomics, 17 (17-18)
DOI 10.1002/pmic.201600417, PubMed 28755400

Tortelli TC, de Godoy LMF, de Souza GA, Bonatto D, Otake AH, de Freitas Saito R, Rosa JC, Greene LJ, Chammas R (2017)
Accumulation of prohibitin is a common cellular response to different stressing stimuli and protects melanoma cells from ER stress and chemotherapy-induced cell death
Oncotarget, 8 (26), 43114-43129
DOI 10.18632/oncotarget.17810, PubMed 28562344

Publications 2016

Dørum S, Steinsbø Ø, Bergseng E, Arntzen MØ, de Souza GA, Sollid LM (2016)
Gluten-specific antibodies of celiac disease gut plasma cells recognize long proteolytic fragments that typically harbor T-cell epitopes
Sci Rep, 6, 25565
DOI 10.1038/srep25565, PubMed 27146306

Haugsten EM, Sørensen V, Kunova Bosakova M, de Souza GA, Krejci P, Wiedlocha A, Wesche J (2016)
Proximity Labeling Reveals Molecular Determinants of FGFR4 Endosomal Transport
J Proteome Res, 15 (10), 3841-3855
DOI 10.1021/acs.jproteome.6b00652, PubMed 27615514

Karlsen TA, de Souza GA, Ødegaard B, Engebretsen L, Brinchmann JE (2016)
microRNA-140 Inhibits Inflammation and Stimulates Chondrogenesis in a Model of Interleukin 1β-induced Osteoarthritis
Mol Ther Nucleic Acids, 5 (10), e373
DOI 10.1038/mtna.2016.64, PubMed 27727249

Lund-Johansen F, de la Rosa Carrillo D, Mehta A, Sikorski K, Inngjerdingen M, Kalina T, Røysland K, de Souza GA, Bradbury AR, Lecrevisse Q, Stuchly J (2016)
MetaMass, a tool for meta-analysis of subcellular proteomics data
Nat Methods, 13 (10), 837-40
DOI 10.1038/nmeth.3967, PubMed 27571551

Paiva AL, Oliveira JT, de Souza GA, Vasconcelos IM (2016)
Label-free Proteomic Reveals that Cowpea Severe Mosaic Virus Transiently Suppresses the Host Leaf Protein Accumulation During the Compatible Interaction with Cowpea (Vigna unguiculata [L.] Walp.)
J Proteome Res, 15 (12), 4208-4220
DOI 10.1021/acs.jproteome.6b00211, PubMed 27934294

Rowczenio D, Stensland M, de Souza GA, Strøm EH, Gilbertson JA, Taylor G, Rendell N, Minogue S, Efebera YA, Lachmann HJ, Wechalekar AD, Hawkins PN, Heimdal KR, Selvig K, Lægreid IK, Demoulin N, Aydin S, Gillmore JD, Wien TN (2016)
Renal Amyloidosis Associated With 5 Novel Variants in the Fibrinogen A Alpha Chain Protein
Kidney Int Rep, 2 (3), 461-469
DOI 10.1016/j.ekir.2016.11.005, PubMed 29142973

Sanchuki HB, Gravina F, Rodrigues TE, Gerhardt EC, Pedrosa FO, Souza EM, Raittz RT, Valdameri G, de Souza GA, Huergo LF (2016)
Dynamics of the Escherichia coli proteome in response to nitrogen starvation and entry into the stationary phase
Biochim Biophys Acta Proteins Proteom, 1865 (3), 344-352
DOI 10.1016/j.bbapap.2016.12.002, PubMed 27939605

Vasilevska J, De Souza GA, Stensland M, Skrastina D, Zhulenkovs D, Paplausks R, Kurena B, Kozlovska T, Zajakina A (2016)
Comparative protein profiling of B16 mouse melanoma cells susceptible and non-susceptible to alphavirus infection: Effect of the tumor microenvironment
Cancer Biol Ther, 17 (10), 1035-1050
DOI 10.1080/15384047.2016.1219813, PubMed 27636533

Publications 2015

Camassa LMA, Lunde LK, Hoddevik EH, Stensland M, Boldt HB, De Souza GA, Ottersen OP, Amiry-Moghaddam M (2015)
Mechanisms underlying AQP4 accumulation in astrocyte endfeet
Glia, 63 (11), 2073-2091
DOI 10.1002/glia.22878, PubMed 26119521

Fortuin S, Tomazella GG, Nagaraj N, Sampson SL, Gey van Pittius NC, Soares NC, Wiker HG, de Souza GA, Warren RM (2015)
Phosphoproteomics analysis of a clinical Mycobacterium tuberculosis Beijing isolate: expanding the mycobacterial phosphoproteome catalog
Front Microbiol, 6, 6
DOI 10.3389/fmicb.2015.00006, PubMed 25713560

Johansen JN, Vartdal F, Desmarais C, Tutturen AE, de Souza GA, Lossius A, Holmøy T (2015)
Intrathecal BCR transcriptome in multiple sclerosis versus other neuroinflammation: Equally diverse and compartmentalized, but more mutated, biased and overlapping with the proteome
Clin Immunol, 160 (2), 211-25
DOI 10.1016/j.clim.2015.06.001, PubMed 26055752

Kalayou S, Granum C, Berntsen HF, Groseth PK, Verhaegen S, Connolly L, Brandt I, de Souza GA, Ropstad E (2015)
Label-free based quantitative proteomics analysis of primary neonatal porcine Leydig cells exposed to the persistent contaminant 3-methylsulfonyl-DDE
J Proteomics, 137, 68-82
DOI 10.1016/j.jprot.2015.12.007, PubMed 26691841

Riaz T, Sollid LM, Olsen I, de Souza GA (2015)
Quantitative Proteomics of Gut-Derived Th1 and Th1/Th17 Clones Reveal the Presence of CD28+ NKG2D- Th1 Cytotoxic CD4+ T cells
Mol Cell Proteomics, 15 (3), 1007-16
DOI 10.1074/mcp.M115.050138, PubMed 26637539

Publications 2014

Bergseng E, Dørum S, Arntzen MØ, Nielsen M, Nygård S, Buus S, de Souza GA, Sollid LM (2014)
Different binding motifs of the celiac disease-associated HLA molecules DQ2.5, DQ2.2, and DQ7.5 revealed by relative quantitative proteomics of endogenous peptide repertoires
Immunogenetics, 67 (2), 73-84
DOI 10.1007/s00251-014-0819-9, PubMed 25502872

Dørum S, Bodd M, Fallang LE, Bergseng E, Christophersen A, Johannesen MK, Qiao SW, Stamnaes J, de Souza GA, Sollid LM (2014)
HLA-DQ molecules as affinity matrix for identification of gluten T cell epitopes
J Immunol, 193 (9), 4497-506
DOI 10.4049/jimmunol.1301466, PubMed 25261484

Kroll JE, de Souza SJ, de Souza GA (2014)
Identification of rare alternative splicing events in MS/MS data reveals a significant fraction of alternative translation initiation sites
PeerJ, 2, e673
DOI 10.7717/peerj.673, PubMed 25405079

Ostevik L, de Souza GA, Wien TN, Gunnes G, Sørby R (2014)
Characterization of amyloid in equine recurrent uveitis as AA amyloid
J Comp Pathol, 151 (2-3), 228-33
DOI 10.1016/j.jcpa.2014.04.007, PubMed 24975895

Tutturen AE, Fleckenstein B, de Souza GA (2014)
Assessing the citrullinome in rheumatoid arthritis synovial fluid with and without enrichment of citrullinated peptides
J Proteome Res, 13 (6), 2867-73
DOI 10.1021/pr500030x, PubMed 24724574

Østevik L, Gunnes G, de Souza GA, Wien TN, Sørby R (2014)
Nasal and ocular amyloidosis in a 15-year-old horse
Acta Vet Scand, 56, 50
DOI 10.1186/s13028-014-0050-6, PubMed 25159190

Publications 2013

Koehler CJ, Arntzen MØ, de Souza GA, Thiede B (2013)
An approach for triplex-isobaric peptide termini labeling (triplex-IPTL)
Anal Chem, 85 (4), 2478-85
DOI 10.1021/ac3035508, PubMed 23316706

Publications 2011

de Souza GA, Leversen NA, Målen H, Wiker HG (2011)
Bacterial proteins with cleaved or uncleaved signal peptides of the general secretory pathway
J Proteomics, 75 (2), 502-10
DOI 10.1016/j.jprot.2011.08.016, PubMed 21920479

de Souza GA, Wiker HG (2011)
A proteomic view of mycobacteria
Proteomics, 11 (15), 3118-27
DOI 10.1002/pmic.201100043, PubMed 21726049

Målen H, De Souza GA, Pathak S, Søfteland T, Wiker HG (2011)
Comparison of membrane proteins of Mycobacterium tuberculosis H37Rv and H37Ra strains
BMC Microbiol, 11, 18
DOI 10.1186/1471-2180-11-18, PubMed 21261938

Tomazella GG, Risberg K, Mylvaganam H, Lindemann PC, Thiede B, Souza GA, Wiker HG (2011)
Proteomic analysis of a multi-resistant clinical Escherichia coli isolate of unknown genomic background
J Proteomics, 75 (6), 1830-7
DOI 10.1016/j.jprot.2011.12.024, PubMed 22236517

Wiker HG, Tomazella GG, de Souza GA (2011)
A quantitative view on Mycobacterium leprae antigens by proteomics
J Proteomics, 74 (9), 1711-9
DOI 10.1016/j.jprot.2011.01.004, PubMed 21278007

Publications 2010

de Souza GA, Arntzen MØ, Fortuin S, Schürch AC, Målen H, McEvoy CR, van Soolingen D, Thiede B, Warren RM, Wiker HG (2010)
Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database
Mol Cell Proteomics, 10 (1), M110.002527
DOI 10.1074/mcp.M110.002527, PubMed 21030493

de Souza GA, Arntzen MØ, Wiker HG (2010)
MSMSpdbb: providing protein databases of closely related organisms to improve proteomic characterization of prokaryotic microbes
Bioinformatics, 26 (5), 698-9
DOI 10.1093/bioinformatics/btq004, PubMed 20080508

de Souza GA, Fortuin S, Aguilar D, Pando RH, McEvoy CR, van Helden PD, Koehler CJ, Thiede B, Warren RM, Wiker HG (2010)
Using a label-free proteomics method to identify differentially abundant proteins in closely related hypo- and hypervirulent clinical Mycobacterium tuberculosis Beijing isolates
Mol Cell Proteomics, 9 (11), 2414-23
DOI 10.1074/mcp.M900422-MCP200, PubMed 20190197

de Souza GA, Wiker HG (2010)
Proteomic Approaches to Study Immunity in Infection
Methods Microbiol., 37, 101-114

Målen H, Pathak S, Søfteland T, de Souza GA, Wiker HG (2010)
Definition of novel cell envelope associated proteins in Triton X-114 extracts of Mycobacterium tuberculosis H37Rv
BMC Microbiol, 10, 132
DOI 10.1186/1471-2180-10-132, PubMed 20429878

Tomazella GG, daSilva I, Thomé CH, Greene LJ, Koehler CJ, Thiede B, Wiker HG, de Souza GA (2010)
Analysis of detergent-insoluble and whole cell lysate fractions of resting neutrophils using high-resolution mass spectrometry
J Proteome Res, 9 (4), 2030-6
DOI 10.1021/pr1000253, PubMed 20158270

Publications 2009

Carpenter JE, Jackson W, de Souza GA, Haarr L, Grose C (2009)
Insulin-degrading enzyme binds to the nonglycosylated precursor of varicella-zoster virus gE protein found in the endoplasmic reticulum
J Virol, 84 (2), 847-55
DOI 10.1128/JVI.01801-09, PubMed 19864391

de Souza GA, Søfteland T, Koehler CJ, Thiede B, Wiker HG (2009)
Validating divergent ORF annotation of the Mycobacterium leprae genome through a full translation data set and peptide identification by tandem mass spectrometry
Proteomics, 9 (12), 3233-43
DOI 10.1002/pmic.200800955, PubMed 19562797

De Souza GA, Wiker HG (2009)
The Impact of Proteomic Advances on Bacterial Gene Annotation
Curr. Proteomics, 6 (2), 84-92

Leversen NA, de Souza GA, Målen H, Prasad S, Jonassen I, Wiker HG (2009)
Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods
Microbiology, 155 (Pt 7), 2375-83
DOI 10.1099/mic.0.025270-0, PubMed 19389770

Pathak S, De Souza GA, Salte T, Wiker HG, Asjö B (2009)
HIV induces both a down-regulation of IRAK-4 that impairs TLR signalling and an up-regulation of the antibiotic peptide dermcidin in monocytic cells
Scand J Immunol, 70 (3), 264-76
DOI 10.1111/j.1365-3083.2009.02299.x, PubMed 19703016

Tomazella GG, da Silva I, Laure HJ, Rosa JC, Chammas R, Wiker HG, de Souza GA, Greene LJ (2009)
Proteomic analysis of total cellular proteins of human neutrophils
Proteome Sci, 7, 32
DOI 10.1186/1477-5956-7-32, PubMed 19719850

Publications 2008

de Souza GA, Målen H, Søfteland T, Saelensminde G, Prasad S, Jonassen I, Wiker HG (2008)
High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example
BMC Genomics, 9, 316
DOI 10.1186/1471-2164-9-316, PubMed 18597682

Målen H, Berven FS, Søfteland T, Arntzen MØ, D'Santos CS, De Souza GA, Wiker HG (2008)
Membrane and membrane-associated proteins in Triton X-114 extracts of Mycobacterium bovis BCG identified using a combination of gel-based and gel-free fractionation strategies
Proteomics, 8 (9), 1859-70
DOI 10.1002/pmic.200700528, PubMed 18442171

Publications 2006

de Godoy LM, Olsen JV, de Souza GA, Li G, Mortensen P, Mann M (2006)
Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system
Genome Biol, 7 (6), R50
DOI 10.1186/gb-2006-7-6-r50, PubMed 16784548

de Souza GA, Godoy LM, Mann M (2006)
Identification of 491 proteins in the tear fluid proteome reveals a large number of proteases and protease inhibitors
Genome Biol, 7 (8), R72
DOI 10.1186/gb-2006-7-8-R72, PubMed 16901338

de Souza GA, Godoy LM, Teixeira VR, Otake AH, Sabino A, Rosa JC, Dinarte AR, Pinheiro DG, Silva WA, Eberlin MN, Chammas R, Greene LJ (2006)
Proteomic and SAGE profiling of murine melanoma progression indicates the reduction of proteins responsible for ROS degradation
Proteomics, 6 (5), 1460-70
DOI 10.1002/pmic.200500243, PubMed 16429458

Publications 2003

De Souza GA, Oliveira PS, Trapani S, Santos AC, Rosa JC, Laure HJ, Faça VM, Correia MT, Tavares GA, Oliva G, Coelho LC, Greene LJ (2003)
Amino acid sequence and tertiary structure of Cratylia mollis seed lectin
Glycobiology, 13 (12), 961-72
DOI 10.1093/glycob/cwg115, PubMed 12966038

Publications 2000

Veiga SS, Feitosa L, dos Santos VL, de Souza GA, Ribeiro AS, Mangili OC, Porcionatto MA, Nader HB, Dietrich CP, Brentani RR, Gremski W (2000)
Effect of brown spider venom on basement membrane structures
Histochem J, 32 (7), 397-408
PubMed 10987503

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