Publications 2021

Martín L, Kamstra JH, Hurem S, Lindeman LC, Brede DA, Aanes H, Babiak I, Arenal A, Oughton D, Salbu B, Lyche JL, Aleström P (2021)
Altered non-coding RNA expression profile in F₁ progeny 1 year after parental irradiation is linked to adverse effects in zebrafish
Sci Rep, 11 (1), 4142
DOI 10.1038/s41598-021-83345-3, PubMed 33602989

Publications 2020

Wessel Ø, Hansen EF, Dahle MK, Alarcon M, Vatne NA, Nyman IB, Soleim KB, Dhamotharan K, Timmerhaus G, Markussen T, Lund M, Aanes H, Devold M, Inami M, Løvoll M, Rimstad E (2020)
Piscine Orthoreovirus-1 Isolates Differ in Their Ability to Induce Heart and Skeletal Muscle Inflammation in Atlantic Salmon (Salmo salar)
Pathogens, 9 (12)
DOI 10.3390/pathogens9121050, PubMed 33327651

Publications 2019

Bjørkhaug ST, Neupane SP, Bramness JG, Aanes H, Skar V, Medhus AW, Valeur J (2019)
Plasma cytokine levels in patients with chronic alcohol overconsumption: Relations to gut microbiota markers and clinical correlates
Alcohol, 85, 35-40
DOI 10.1016/j.alcohol.2019.10.002, PubMed 31610228

Bjørkhaug ST, Aanes H, Neupane SP, Bramness JG, Malvik S, Henriksen C, Skar V, Medhus AW, Valeur J (2019)
Characterization of gut microbiota composition and functions in patients with chronic alcohol overconsumption
Gut Microbes, 10 (6), 663-675
DOI 10.1080/19490976.2019.1580097, PubMed 30894059

Prikrylova T, Robertson J, Ferrucci F, Konorska D, Aanes H, Manaf A, Zhang B, Vågbø CB, Kuśnierczyk A, Gilljam KM, Løvkvam-Køster C, Otterlei M, Dahl JA, Enserink J, Klungland A, Robertson AB (2019)
5-hydroxymethylcytosine Marks Mammalian Origins Acting as a Barrier to Replication
Sci Rep, 9 (1), 11065
DOI 10.1038/s41598-019-47528-3, PubMed 31363131

Publications 2017

Chymkowitch P, Nguéa P A, Aanes H, Robertson J, Klungland A, Enserink JM (2017)
TORC1-dependent sumoylation of Rpc82 promotes RNA polymerase III assembly and activity
Proc Natl Acad Sci U S A, 114 (5), 1039-1044
DOI 10.1073/pnas.1615093114, PubMed 28096404

Chymkowitch P, P AN, Aanes H, Koehler CJ, Thiede B, Lorenz S, Meza-Zepeda LA, Klungland A, Enserink JM (2017)
Corrigendum: Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes
Genome Res, 27 (2), 334
DOI 10.1101/gr.218370.116, PubMed 28148563

Landfors M, Johansen J, Aronsen JM, Vågbø CB, Doré LC, He C, Sjaastad I, Sætrom P, Fedorcsák P, Dahl JA, Aanes H, Fußer M, Klungland A (2017)
Genome-wide profiling of DNA 5-hydroxymethylcytosine during rat Sertoli cell maturation
Cell Discov, 3, 17013
DOI 10.1038/celldisc.2017.13, PubMed 28529766

Malachin G, Reiten MR, Salvesen Ø, Aanes H, Kamstra JH, Skovgaard K, Heegaard PMH, Ersdal C, Espenes A, Tranulis MA, Bakkebø MK (2017)
Loss of prion protein induces a primed state of type I interferon-responsive genes
PLoS One, 12 (6), e0179881
DOI 10.1371/journal.pone.0179881, PubMed 28651013

Publications 2016

Dahl JA, Jung I, Aanes H, Greggains GD, Manaf A, Lerdrup M, Li G, Kuan S, Li B, Lee AY, Preissl S, Jermstad I, Haugen MH, Suganthan R, Bjørås M, Hansen K, Dalen KT, Fedorcsak P, Ren B, Klungland A (2016)
Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition
Nature, 537 (7621), 548-552
DOI 10.1038/nature19360, PubMed 27626377

Skjærven KH, Jakt LM, Dahl JA, Espe M, Aanes H, Hamre K, Fernandes JM (2016)
Parental vitamin deficiency affects the embryonic gene expression of immune-, lipid transport- and apolipoprotein genes
Sci Rep, 6, 34535
DOI 10.1038/srep34535, PubMed 27731423

Publications 2015

Chymkowitch P, Nguéa AP, Aanes H, Koehler CJ, Thiede B, Lorenz S, Meza-Zepeda LA, Klungland A, Enserink JM (2015)
Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes
Genome Res, 25 (6), 897-906
DOI 10.1101/gr.185793.114, PubMed 25800674

Publications 2014

Aanes H, Winata C, Moen LF, Østrup O, Mathavan S, Collas P, Rognes T, Aleström P (2014)
Normalization of RNA-sequencing data from samples with varying mRNA levels
PLoS One, 9 (2), e89158
DOI 10.1371/journal.pone.0089158, PubMed 24586560

Publications 2013

Andersen IS, Lindeman LC, Reiner AH, Østrup O, Aanes H, Aleström P, Collas P (2013)
Epigenetic marking of the zebrafish developmental program
Curr Top Dev Biol, 104, 85-112
DOI 10.1016/B978-0-12-416027-9.00003-6, PubMed 23587239

Aanes H, Collas P, Aleström P (2013)
Transcriptome dynamics and diversity in the early zebrafish embryo
Brief Funct Genomics, 13 (2), 95-105
DOI 10.1093/bfgp/elt049, PubMed 24335756

Aanes H, Østrup O, Andersen IS, Moen LF, Mathavan S, Collas P, Alestrom P (2013)
Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish
BMC Genomics, 14, 331
DOI 10.1186/1471-2164-14-331, PubMed 23676078

Publications 2012

Andersen IS, Reiner AH, Aanes H, Aleström P, Collas P (2012)
Developmental features of DNA methylation during activation of the embryonic zebrafish genome
Genome Biol, 13 (7), R65
DOI 10.1186/gb-2012-13-7-r65, PubMed 22830626

Publications 2011

Andersen IS, Ostrup O, Lindeman LC, Aanes H, Reiner AH, Mathavan S, Aleström P, Collas P (2011)
Epigenetic complexity during the zebrafish mid-blastula transition
Biochem Biophys Res Commun, 417 (4), 1139-44
DOI 10.1016/j.bbrc.2011.12.077, PubMed 22209792

Lindeman LC, Andersen IS, Reiner AH, Li N, Aanes H, Østrup O, Winata C, Mathavan S, Müller F, Aleström P, Collas P (2011)
Prepatterning of developmental gene expression by modified histones before zygotic genome activation
Dev Cell, 21 (6), 993-1004
DOI 10.1016/j.devcel.2011.10.008, PubMed 22137762

Aanes H, Winata CL, Lin CH, Chen JP, Srinivasan KG, Lee SG, Lim AY, Hajan HS, Collas P, Bourque G, Gong Z, Korzh V, Aleström P, Mathavan S (2011)
Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition
Genome Res, 21 (8), 1328-38
DOI 10.1101/gr.116012.110, PubMed 21555364