Selected recent publications

A high-throughput pipeline for validation of antibodies.Sikorski K, Mehta A, Inngjerdingen M, Thakor F, Kling S, Kalina T, Nyman TA, Stensland ME, Zhou W, de Souza GA, Holden L, Stuchly J, Templin M, Lund-Johansen F. Nat Methods. 2018 Nov;15(11):909-912. doi: 10.1038/s41592-018-0179-8.

Splicing of platelet resident pre-mRNAs upon activation by physiological stimuli results in functionally relevant proteome modifications.Nassa G, Giurato G, Cimmino G, Rizzo F, Ravo M, Salvati A, Nyman TA, Zhu Y, Vesterlund M, Lehtiö J, Golino P, Weisz A, Tarallo R. Sci Rep. 2018 Jan 11;8(1):498. doi: 10.1038/s41598-017-18985-5

The nuclear receptor ERβ engages AGO2 in regulation of gene transcription, RNA splicing and RISC loading.Tarallo R, Giurato G, Bruno G, Ravo M, Rizzo F, Salvati A, Ricciardi L, Marchese G, Cordella A, Rocco T, Gigantino V, Pierri B, Cimmino G, Milanesi L, Ambrosino C, Nyman TA, Nassa G, Weisz A. Genome Biol. 2017 Oct 6;18(1):189. doi: 10.1186/s13059-017-1321-0

Global characterization of protein secretion from human macrophages following non-canonical caspase-4/5 inflammasome activation.Lorey MB, Rossi K, Eklund KK, Nyman TA, Matikainen S. Mol Cell Proteomics. 2017 Feb 14. pii: mcp.M116.064840. doi: 10.1074/mcp.M116.064840. [Epub ahead of print]

Proteomic and Bioinformatic Characterization of Extracellular Vesicles Released from Human Macrophages upon Influenza A Virus Infection.Cypryk W, Lorey M, Puustinen A, Nyman TA, Matikainen S. J Proteome Res. 2017 Jan 6;16(1):217-227. doi: 10.1021/acs.jproteome.6b00596.

microRNA-140 Inhibits Inflammation and Stimulates Chondrogenesis in a Model of Interleukin 1β-induced Osteoarthritis.Karlsen TA, de Souza GA, Ødegaard B, Engebretsen L, Brinchmann JE. Mol Ther Nucleic Acids. 2016 Oct 11;5(10):e373. doi: 10.1038/mtna.2016.64

Proximity Labeling Reveals Molecular Determinants of FGFR4 Endosomal Transport.Haugsten EM, Sørensen V, Kunova Bosakova M, de Souza GA, Krejci P, Wiedlocha A, Wesche J. J Proteome Res. 2016 Oct 7;15(10):3841-3855.

MetaMass, a tool for meta-analysis of subcellular proteomics data.Lund-Johansen F, de la Rosa Carrillo D, Mehta A, Sikorski K, Inngjerdingen M, Kalina T, Røysland K, de Souza GA, Bradbury AR, Lecrevisse Q, Stuchly J. Nat Methods. 2016 Oct;13(10):837-40. doi: 10.1038/nmeth.3967.

Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages.Söderholm S, Kainov DE, Öhman T, Denisova OV, Schepens B, Kulesskiy E, Imanishi SY, Corthals G, Hintsanen P, Aittokallio T, Saelens X, Matikainen S, Nyman TA.  Mol Cell Proteomics. 2016 Oct;15(10):3203-3219.

Quantitative Proteomics of Gut-Derived Th1 and Th1/Th17 Clones Reveal the Presence of CD28+ NKG2D- Th1 Cytotoxic CD4+ T cells.Riaz T, Sollid LM, Olsen I, de Souza GA. Mol Cell Proteomics. 2016 Mar;15(3):1007-16. doi: 10.1074/mcp.M115.050138.

 
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